View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7939_low_3 (Length: 430)
Name: NF7939_low_3
Description: NF7939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7939_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 31285589 - 31285250
Alignment:
| Q |
1 |
tatcatggttaaatgtgtggggaagggaagtcatggaatggatcaaggtcatgttaccggttactcacttgagcgtaaacctacttgccaaataagacca |
100 |
Q |
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| T |
31285589 |
tatcatggttaaatgtgt-----agggaagtcatggaatggatcaaggtcatgttaccggttactcacttgagcgtaaacctacttgccaaataagacca |
31285495 |
T |
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| Q |
101 |
atcatgagagattgtgccttttt-------------gctgaaaaattt--------gttttcgannnnnnnnnaccctagtaatcgcggtcaaaaatgtg |
179 |
Q |
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| T |
31285494 |
atcatgagagattgtgcctttttgctattcctttgagctgaaaaatttaaaaatttgttttcgatttttttttaccctagtaatcgcattcaaaaatgtg |
31285395 |
T |
|
| Q |
180 |
attaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacataattaatcacaatttcattaatttcaaagtgaacc |
279 |
Q |
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| T |
31285394 |
attaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacataattaaccacaatttcattaatttcaaagtgaacc |
31285295 |
T |
|
| Q |
280 |
atatactcaactgaattaaccataattatgcatgtgattaacctg |
324 |
Q |
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| T |
31285294 |
atatactcaactgaattaaccataattatgcatgtgattaacctg |
31285250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 31285252 - 31285200
Alignment:
| Q |
358 |
ctgaagtattttttgttgaagaaaacctctgtcaggtttcagtcttggatgtcct |
412 |
Q |
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| T |
31285252 |
ctgaagttttttttgttgaagaaaacct--gtcaggtttcagtcttggatgtcct |
31285200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 40894836 - 40894688
Alignment:
| Q |
171 |
aaaaatgtgattaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacataattaatcacaatttcattaatttca |
270 |
Q |
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| T |
40894836 |
aaaaatgtggttatttcagttgagtagatggttaatttaattcacagtca-aattatggttaattcaactacatagttaaccgcaatctcacaattttct |
40894738 |
T |
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| Q |
271 |
aagtg--aaccatatactcaactgaattaaccataattatgcatgtgatt |
318 |
Q |
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| T |
40894737 |
aagtgatagccatattcttaagggaattaaccacaattatacatgtgatt |
40894688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 38504331 - 38504372
Alignment:
| Q |
279 |
catatactcaactgaattaaccataattatgcatgtgattaa |
320 |
Q |
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| T |
38504331 |
catatattcaactgaattaaccataattttgcatgtgattaa |
38504372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 39677532 - 39677574
Alignment:
| Q |
271 |
aagtgaaccatatactcaactgaattaaccataattatgcatg |
313 |
Q |
| |
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| T |
39677532 |
aagttaaccatatactcaactgagttaaccacaattatgcatg |
39677574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 19297055 - 19297001
Alignment:
| Q |
207 |
tcaattcacagtcataattatggttaattcaactacataattaatcacaatttca |
261 |
Q |
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| T |
19297055 |
tcaattcacggtcaaaattctggttaattcaactacatgattaaccacaatttca |
19297001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 20727178 - 20727132
Alignment:
| Q |
276 |
aaccatatactcaactgaattaaccataattatgcatgtgattaacc |
322 |
Q |
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| T |
20727178 |
aaccatatactcaagtgaattaaccacaattttgcatgtgattaacc |
20727132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 16530291 - 16530214
Alignment:
| Q |
181 |
ttaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacataattaatcacaatt |
258 |
Q |
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| T |
16530291 |
ttaattcagttgagtggatgattatatcaattcacagtcaaaattgtggttgattcaagtacatgattaaccacaatt |
16530214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 33004691 - 33004646
Alignment:
| Q |
217 |
gtcataattatggttaattcaactacataattaatcacaatttcat |
262 |
Q |
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| T |
33004691 |
gtcaaaattgtggttaattcaacgacataattaaccacaatttcat |
33004646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 40242860 - 40242933
Alignment:
| Q |
171 |
aaaaatgtgattaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacat |
244 |
Q |
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| T |
40242860 |
aaaaatatgattaatttagtttagtaaatggttaattcaattcacaatcaaaattgtggttaattcaactacat |
40242933 |
T |
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