View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7939_low_4 (Length: 336)
Name: NF7939_low_4
Description: NF7939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7939_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 38320711 - 38320412
Alignment:
| Q |
18 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320711 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcg |
38320612 |
T |
|
| Q |
118 |
cgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38320611 |
cgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaaatc |
38320512 |
T |
|
| Q |
218 |
ctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaagaccttcatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320511 |
ctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaagaccttcatg |
38320412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 38305885 - 38305586
Alignment:
| Q |
18 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||| ||||||||||||| ||||| ||||||| || |
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|
| T |
38305885 |
ccccaatcactcaaaaactcaaccattctctcacacatctcggctacagtgggtaaaacaacacagaagttgagaaccttactatttaacttccaatccg |
38305786 |
T |
|
| Q |
118 |
cgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaattc |
217 |
Q |
| |
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||||| ||||||| || |||||||| ||||||||||| | |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38305785 |
cgtcaacaaaatgcgcagtcaaacagatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattc |
38305686 |
T |
|
| Q |
218 |
ctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaagaccttcatg |
317 |
Q |
| |
|
||||||||||| |||||| ||||| |||| ||||| ||||||||||||| |||||||| || |||||||| |||| |||||||||||||||||||||| |
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| T |
38305685 |
ttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataacatctacaggaggcaaaacaatatttggatttaagaccttcatg |
38305586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 38313207 - 38312910
Alignment:
| Q |
18 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtggga---tcaacagtacagaaggtgagaaccttactctttaatttccaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||| ||||||| ||||| ||||| ||||||| |
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|
| T |
38313207 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtaggagggtaaacaagacagaagttgagaactttactatttaacttccaat |
38313108 |
T |
|
| Q |
115 |
tcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctatt----aggaatggtag |
210 |
Q |
| |
|
|||| ||| | |||||||| |||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||| ||||||||||| |
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|
| T |
38313107 |
tcgcatcaacgaaatgagcagtcaaacaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtag |
38313008 |
T |
|
| Q |
211 |
ccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
308 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||||||| ||||||||||||| || ||||||| ||||||||||||| |||||||||||||| |
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|
| T |
38313007 |
ccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
38312910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 88 - 309
Target Start/End: Complemental strand, 38316543 - 38316322
Alignment:
| Q |
88 |
tgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaa |
187 |
Q |
| |
|
||||||||||||| || || ||||||||||||||| |||||||||| |||||||||||||||||||| || ||| |||||||||| ||||| |||||| |
|
|
| T |
38316543 |
tgagaaccttactattcaacttccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcagtggtgttagattcccacaaatcaaaagttaa |
38316444 |
T |
|
| Q |
188 |
agatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggc |
287 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||| |||||||||| | ||||| |
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|
| T |
38316443 |
agatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggt |
38316344 |
T |
|
| Q |
288 |
ataacagcatttggatttaaga |
309 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38316343 |
ataacagcatttggatttaaga |
38316322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 38325461 - 38325169
Alignment:
| Q |
18 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtg---ggatcaacagtacagaaggtgagaaccttactctttaatttccaat |
114 |
Q |
| |
|
||||||||| |||| || |||| |||||| |||||||||||| | |||||| || | ||| ||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
38325461 |
ccccaatcattcaacaattcaatcattctttcacacatctcaccaccagtgtcagggtagacactacagaaattgagaaccttactatttaccttccaat |
38325362 |
T |
|
| Q |
115 |
tcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaa |
214 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| |||| | |||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
38325361 |
tcgcgtcaacaaaatgagcggtcagacaaatgtaaggcatagtagtgcaagattcccacaaatcaaaagttaaagataccctattaggaatggtagccaa |
38325262 |
T |
|
| Q |
215 |
ttcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaa |
307 |
Q |
| |
|
|| ||||||||||| |||| ||||| ||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
38325261 |
ttgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaa |
38325169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 38299966 - 38299730
Alignment:
| Q |
18 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcg |
117 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| | ||||||| |||| |||||| | ||||||||||| ||||| ||||||| || |
|
|
| T |
38299966 |
ccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccg |
38299867 |
T |
|
| Q |
118 |
cgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaattc |
217 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| ||||||| | |
|
|
| T |
38299866 |
cgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctg |
38299767 |
T |
|
| Q |
218 |
ctgtttaagcttgagtttcgctttcgtgtacaaatcc |
254 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
38299766 |
ttgtttaatattgagtttctcttcagtgtacaaatcc |
38299730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 38308541 - 38308385
Alignment:
| Q |
95 |
cttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatc |
194 |
Q |
| |
|
|||||| ||||| ||||||| |||| || |||||||||||| |||||||||||||| | ||||| || |||||||||| |||| |||||||||||| |
|
|
| T |
38308541 |
cttactatttaacttccaatccgcgccaacaaaatgagcggataaacaaatataagtgccagtagtacaagattcccacaactcaaaggttaaagatatc |
38308442 |
T |
|
| Q |
195 |
ctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaa |
251 |
Q |
| |
|
||| |||||||||||||| || ||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
38308441 |
ttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 38850729 - 38851023
Alignment:
| Q |
18 |
ccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtggga---tcaacagtacagaaggtgagaaccttactctttaatttccaat |
114 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| ||||| | | ||| ||| | |||| || ||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
38850729 |
ccccaatcattcaacaactcaaccattctctcacaaatctccccactagtaggaggataaacaagacggaaattgataaccttactatttaacttccaat |
38850828 |
T |
|
| Q |
115 |
tcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaa |
214 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||| ||||| || |||||||||||||||||||||||||| || |
|
|
| T |
38850829 |
tcgcgtcaacaaaatgagcagtcaaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaa |
38850928 |
T |
|
| Q |
215 |
ttcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaaga |
309 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||||| || || ||||| | ||||||||| ||||||| ||| | |||||||||||||| |
|
|
| T |
38850929 |
ttgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtataggaatatttggatttaaga |
38851023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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