View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7939_low_5 (Length: 293)
Name: NF7939_low_5
Description: NF7939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7939_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 3767611 - 3767343
Alignment:
| Q |
14 |
tgaaatagttagaaaaatacgtaccctacatcccactccatttgtcatttttccttcactttcctcttcttataattttgttcctcactttctttaactt |
113 |
Q |
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| T |
3767611 |
tgaaatagttagaaaaatacgtaccctacatcccactccatttgtcatttttccttcactttcctcttcttataattttgttcctcactttctttaactt |
3767512 |
T |
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| Q |
114 |
cacttcattaagcttccactattattgtcttctctcctagtcctccactactttactgtctccacagttagcatcacaacaatctcttgcatccaccata |
213 |
Q |
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| T |
3767511 |
cacttcattaagcttccactattattgtcttctctcctagtcctccactactttactgtctccacagttagcatcacaacaatctcttgcatccaccata |
3767412 |
T |
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| Q |
214 |
atgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgct |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767411 |
atgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgct |
3767343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 3781398 - 3781333
Alignment:
| Q |
208 |
accataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactc |
276 |
Q |
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| T |
3781398 |
accacaatgccttcccaacatttcctca---ctttgttcttcttccttctcatatcttgcaacacactc |
3781333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 3777082 - 3777017
Alignment:
| Q |
208 |
accataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactc |
276 |
Q |
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| T |
3777082 |
accacaatgtcttccaaacatttcctca---ctttgttcttcttccttcttatctcttgtaacacactc |
3777017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 3752006 - 3751970
Alignment:
| Q |
236 |
tcactttgttcttcttccttctcatatcttgcaacac |
272 |
Q |
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| T |
3752006 |
tcactttgttcttcttccttctcctctcttgcaacac |
3751970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 3763000 - 3762949
Alignment:
| Q |
218 |
cttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacac |
272 |
Q |
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| T |
3763000 |
cttccaaacatttcctca---ctttgttcttcttccttctactttcttgcaacac |
3762949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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