View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7939_low_6 (Length: 242)
Name: NF7939_low_6
Description: NF7939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7939_low_6 |
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| [»] scaffold0206 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 3476613 - 3476496
Alignment:
| Q |
110 |
atccaaaccttgcaacccatcaacacaagctctcggctcctccttttccggctcaatcacaccaacgacatctgaagcatcctcgccgcccagctttgga |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3476613 |
atccaaaccttgcaacccatcaacacaagctcccggctcctccttttccgactcaatcacaccaacgacatctgaagcatcctcgccgcccggctttgga |
3476514 |
T |
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| Q |
210 |
tcgtcgatgcaatcatct |
227 |
Q |
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|||||||||||||||||| |
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| T |
3476513 |
tcgtcgatgcaatcatct |
3476496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3476722 - 3476671
Alignment:
| Q |
1 |
aacaccaaaattccttgaaatcgtttcaagcatagccaccaaccaagatagg |
52 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
3476722 |
aacaccaaaattccttgaaattgtttcaaggatagccaccaaccaagatagg |
3476671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 15958 - 15841
Alignment:
| Q |
110 |
atccaaaccttgcaacccatcaacacaagctctcggctcctccttttccggctcaatcacaccaacgacatctgaagcatcctcgccgcccagctttgga |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||| | |||||||| |
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| T |
15958 |
atccaaaccttgcaacccatcaacacaagctcccggctccttgttttccagctcaatcacaccaacgacatcggacacatcctcgccggacggctttgga |
15859 |
T |
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| Q |
210 |
tcgtcgatgcaatcatct |
227 |
Q |
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|||||||||||||||||| |
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| T |
15858 |
tcgtcgatgcaatcatct |
15841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16067 - 16016
Alignment:
| Q |
1 |
aacaccaaaattccttgaaatcgtttcaagcatagccaccaaccaagatagg |
52 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16067 |
aacaccaaaattccttgaaatcgtttcaagcatagccaccaacgaagatagg |
16016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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