View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7940_high_3 (Length: 475)
Name: NF7940_high_3
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7940_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 212 - 475
Target Start/End: Original strand, 31418271 - 31418537
Alignment:
| Q |
212 |
tatctatgggttatcatcctcaaaaactactgctaaaccagtcacaaccttaaccccagtcaatgaacctttaggcttcaactccggcggcttccattcg |
311 |
Q |
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| T |
31418271 |
tatctatgggttatcatcctcaaaaactactgctaaaccagtcacaaccttaaccccagtcaatgaacctttaggcttcaactccggcggcttccattcg |
31418370 |
T |
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| Q |
312 |
ataaccaccttctcctcttcgcccgaactcttggtaacacaattttccttcaaaa---tcttctgattctgtgaattcacattcattcgtgtgtaagatg |
408 |
Q |
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| T |
31418371 |
ataaccaccttctcctcttcgcccgaactctcggtaacacaattttccttcaaaatcttcttctgattctgtgaattcacattcattcgtgtgtaagatg |
31418470 |
T |
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| Q |
409 |
agagccattttgctttgacatattcgactctcctccatggcggaactggcattcccttcttcttcaa |
475 |
Q |
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| T |
31418471 |
agagccattttgctttgacatattcgactctcctccacggcggaactggcattcccttcttcttcaa |
31418537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 31418088 - 31418221
Alignment:
| Q |
17 |
agttacaaaaactacacctcaactttattatatttcatattagtaaaaagtccatcccatacttcaagaaaaaatcagaaggggatagaattagagatgt |
116 |
Q |
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| T |
31418088 |
agttacaaaaactacacctcaactttattatatttcatattagtaaaaagtccatcccatacttcaagaaaaaatcagaaggggatagaattagagatgt |
31418187 |
T |
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| Q |
117 |
tacaagcacaattagattcttaatcctcatatta |
150 |
Q |
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| T |
31418188 |
tacaagcacaattagattcttaatcctcatatta |
31418221 |
T |
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