View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7940_high_4 (Length: 437)
Name: NF7940_high_4
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7940_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 2608758 - 2609165
Alignment:
| Q |
5 |
ttccaaaattgtgacaattccacaagctggattagtccttgaaacattcagcttaggaaggtacttgaattatcttttaaaagggttacaaagaaccaat |
104 |
Q |
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| T |
2608758 |
ttccaaaattgtaacaattccacaagctggatttgttcttgaaacattcaacttaggaaggtacttgaattgtcttgtaaaagggttacaaagaaccagt |
2608857 |
T |
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| Q |
105 |
tgaagtgttgttgaatttgttacctttaaaaggatgaggctaccaattggaccaattggtttaagtgatgtttggaatggaaagaaatctaaggaaattt |
204 |
Q |
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| T |
2608858 |
tgaagtgttgttgaatttgtgaccttcaaaaggatgaggctaccaattggaccaattggtttaagtgatgtttggaatggaaagaaatctaatgaaattt |
2608957 |
T |
|
| Q |
205 |
cgtgccannnnnnngtgatgggattgtgagcataacaacatgatttttggtaattgcgaattggtagtgctaagaaccatggtgtagactcatgaggttt |
304 |
Q |
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| T |
2608958 |
cgtgccatttttttgtgatgggattgtgagcataacaacatgatttttggtaattgcgaattggtagtgctaagaaccatggtgtagactcatgaggttt |
2609057 |
T |
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| Q |
305 |
gtatttggttatgaaagttccacatgtgtgccaatttttgcaagttgaccttgctcttgctaaggaatctggagagagaaaagagaagatggatgataga |
404 |
Q |
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| T |
2609058 |
gtatttggttatggaagttccacatgtgtgccaattcttgcaagttgatcttgctcttgctaaggaatctggagagagaaaagagaagatggatgataga |
2609157 |
T |
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| Q |
405 |
acaccaaa |
412 |
Q |
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| T |
2609158 |
acatcaaa |
2609165 |
T |
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