View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7940_low_1 (Length: 616)
Name: NF7940_low_1
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7940_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 12164801 - 12165235
Alignment:
| Q |
17 |
attttgatacattatctgtttcataaaggaaacaa------------caatacatagaagattaagttacatttgagccaattgttggatattaattgga |
104 |
Q |
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| T |
12164801 |
attttgatacattatctgtttcataaaggaaacaacagtaattacaacaatacatagaagattaagttacatttgagccaattgttggatattaattgga |
12164900 |
T |
|
| Q |
105 |
taagcatcattctgggggccattaacagctctccaagcaaatacataagttgcagactgtgtggggtggaaagcatcccagaacacatattgtgctctgt |
204 |
Q |
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| T |
12164901 |
taagcatcattctgggggccattaacagctctccaagcaaatacataagttgcagactgcgttgggtgaaaagcatcccagaacacatattgtgctctgt |
12165000 |
T |
|
| Q |
205 |
ttgcacatggaaattgcattgggagacatgatatttggcctctattccttccaagaccacaacaagctctatcaataacactgaatgctgcaaccacaac |
304 |
Q |
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| T |
12165001 |
ttgcacatggaaattgcattgggagacatgatatttggcctctattccttccaagaccacaacaagctctatcaataacactgaatgctgcaaccacaac |
12165100 |
T |
|
| Q |
305 |
aaaaaatcaccattatgaacacaaatccatcgtattcggttgaataaacaacttaattaagctcttatagtaaaagataaaatcaaatcaaattgtttat |
404 |
Q |
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| T |
12165101 |
aaaaaatcaccattatgaacacaaatccatcgtcttcggttgaataaacaacttaattaagctcttatagcaaaagataaaataaaataaaattgtttat |
12165200 |
T |
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| Q |
405 |
attggttgtaaactatgaagcacggatgcggacac |
439 |
Q |
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| T |
12165201 |
attggttgtaaactatgaagcacggatgcagacac |
12165235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 496 - 602
Target Start/End: Original strand, 12165328 - 12165434
Alignment:
| Q |
496 |
attattagtagtattatatcttaccataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatg |
595 |
Q |
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| T |
12165328 |
attattagtagtattaaatcttaccataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatg |
12165427 |
T |
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| Q |
596 |
gtctctg |
602 |
Q |
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||||||| |
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| T |
12165428 |
gtctctg |
12165434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 14216843 - 14216885
Alignment:
| Q |
417 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
460 |
Q |
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| T |
14216843 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14216885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 14222972 - 14223014
Alignment:
| Q |
417 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
460 |
Q |
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| T |
14222972 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14223014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 48588564 - 48588592
Alignment:
| Q |
344 |
ttgaataaacaacttaattaagctcttat |
372 |
Q |
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| T |
48588564 |
ttgaataaacaacttaattaagctcttat |
48588592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 19213773 - 19213807
Alignment:
| Q |
417 |
ctatgaagcacggatgcggacacagacactgacac |
451 |
Q |
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| T |
19213773 |
ctatgaagcacggatgcggacacggacactgacac |
19213807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 25791616 - 25791650
Alignment:
| Q |
418 |
tatgaagcacggatgcggacacagacactgacacg |
452 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
25791616 |
tatgaagcacggatacggacacagacactgacacg |
25791650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 11560663 - 11560630
Alignment:
| Q |
369 |
ttatagtaaaagataaaatcaaatcaaattgttt |
402 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
11560663 |
ttatagcaaaagataaaatcaaatcaaattgttt |
11560630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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