View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7940_low_11 (Length: 239)
Name: NF7940_low_11
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7940_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 27257541 - 27257319
Alignment:
| Q |
3 |
ggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcgtt |
102 |
Q |
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| T |
27257541 |
ggtaacctccagggaaagtagagataacgttgtgaacgataggatccaacagcaaagaaggccacgttgaggtgcatatgttccgccatagatcttcgtt |
27257442 |
T |
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| Q |
103 |
gttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggtatgaatgatgtct |
202 |
Q |
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| T |
27257441 |
gctgtggcaaatcatgtgacgaagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtgggtatgaatgatgtct |
27257342 |
T |
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| Q |
203 |
gtatctaacctactgaagatatt |
225 |
Q |
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||||||||||||||||||||||| |
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| T |
27257341 |
gtatctaacctactgaagatatt |
27257319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 27240939 - 27240723
Alignment:
| Q |
3 |
ggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcgtt |
102 |
Q |
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| T |
27240939 |
ggtaaccaccagggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttgaggtgcatatgttccgccatagatcttcgtt |
27240840 |
T |
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| Q |
103 |
gttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggtatgaatgatgtct |
202 |
Q |
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| T |
27240839 |
gttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggttgtgccgtcgaggcggggaaggatgtgggtatgcatgatgtct |
27240740 |
T |
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| Q |
203 |
gtatctaacctactgaa |
219 |
Q |
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| T |
27240739 |
ggatctaacctactgaa |
27240723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 27253248 - 27253069
Alignment:
| Q |
3 |
ggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcgtt |
102 |
Q |
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||||||| || || ||||||||||| ||||||| | | || |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
27253248 |
ggtaaccaccgggaaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaagtgcatatgttccgccatagatcttcgtt |
27253149 |
T |
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| Q |
103 |
gttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgt |
185 |
Q |
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| T |
27253148 |
gtt---gcagatcatgtggcggagttctgaagatacacaggataatatggttaaggttgtgccatcgaggcggggcaggatgt |
27253069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27246470 - 27246289
Alignment:
| Q |
1 |
atggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcg |
100 |
Q |
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||||||||| ||||||||||||||||| ||||||| | | || |||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
27246470 |
atggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgccataaatct--- |
27246374 |
T |
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| Q |
101 |
ttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgt |
185 |
Q |
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| T |
27246373 |
ttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgttccatcgaggcggggcaggatgt |
27246289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 7502033 - 7502250
Alignment:
| Q |
4 |
gtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcgttg |
103 |
Q |
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|||||| || |||||||||||||| || | || |||||| ||||||| || |||||||||||||||||||| || ||||||||||||| | |||| |
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| T |
7502033 |
gtaaccaccggggaaagtggagatgacatcgttaacgattggatccataagg---gaaggccactttgaggtgcaaatattccgccatagattgttgttg |
7502129 |
T |
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| Q |
104 |
ttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaa--ggttgtgccgtcgagacggggaaggatgtaggtatgaatgatgtc |
201 |
Q |
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| T |
7502130 |
ttgttgcagatcaggtggcggagttctggagacacggtcgataaggcggttaaatcagtgtgccgtcgaggcgtggaaggatgtggctgttaatgatgtc |
7502229 |
T |
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| Q |
202 |
tgtatctaacctactgaagat |
222 |
Q |
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|| |||||||||||||||||| |
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| T |
7502230 |
tgaatctaacctactgaagat |
7502250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 7500653 - 7500822
Alignment:
| Q |
60 |
aaggccactttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggt |
159 |
Q |
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| T |
7500653 |
aaggccacatggaggtgcaaatgttccgccataattcctcgttgttg---cagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggc |
7500749 |
T |
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| Q |
160 |
tgtgccgtcgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagatattgatgatg |
232 |
Q |
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| T |
7500750 |
tgccccatcgaggcgtggaaggatataggtctggatgatgtctggatctaacctactgaaattattcatgatg |
7500822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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