View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7940_low_5 (Length: 359)
Name: NF7940_low_5
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7940_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 61 - 359
Target Start/End: Complemental strand, 13116478 - 13116180
Alignment:
| Q |
61 |
tgacataacataacatcagttagaggtttaattgattaaattcattattcacaaaataataaatgtcttatagagcaattatatttgtttacctttatta |
160 |
Q |
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| T |
13116478 |
tgacataacataacatcagttagaggtttaattgattaaattcattattcacaaaataataaatgtcttatagagcaattatatttgtttatctttatta |
13116379 |
T |
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| Q |
161 |
catctctttaatccttcattttttctctatctctcttgtcttaacacatcaattataattacacgtcaaataatctatcattttactctctttatttctc |
260 |
Q |
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| T |
13116378 |
catctctttaatccttcattttttctctatctctcttatcttaacacatcaattataattacacgtcaaataatctatcattttactctctttatttctc |
13116279 |
T |
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| Q |
261 |
tctccactagtggtagaattgttttggatgttctagaaagaatgcaattccctgccttttattgatgtgatttctgaataatataaccattgttaatcc |
359 |
Q |
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| T |
13116278 |
tctccattagtggtagaattgttttggatgttctagaaagaatgcaattccctgccttttattgatgtgatttctgaataatataaccattgttaatcc |
13116180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 13116588 - 13116550
Alignment:
| Q |
10 |
aatatgtaggaccctgttaacttgaagagtaagctaagt |
48 |
Q |
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| T |
13116588 |
aatatgtaggaccctgttaacttgaagagtaagctaagt |
13116550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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