View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7940_low_8 (Length: 330)
Name: NF7940_low_8
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7940_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 5469168 - 5468893
Alignment:
| Q |
18 |
gtttctctcatgaaagcataggaaaatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcattctgagaaaaatca |
117 |
Q |
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| T |
5469168 |
gtttctctcaagaaagcataggaaaatatttctttatactataaagcaaaacaatgactttgtaagcacaataactaa---agcattctgagaaaaatca |
5469072 |
T |
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| Q |
118 |
aaattcaaaatcagaattggagattcaacaaagaaaatcatcagag--------------ttgggatacatactaatgatgcgacatttatacatcaaac |
203 |
Q |
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| T |
5469071 |
aaattcaaaatcagaattggagattcaacaaagaaaatcatcagagttggatattcagaattgggatacatactaatgatgcgacatttatacatcaaac |
5468972 |
T |
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| Q |
204 |
attatatcttaattagaggtaaatgcttatatttttcacttatttgtctttgtagtcgattcttacatgccagaacgcgcgcg |
286 |
Q |
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| T |
5468971 |
attatatc----ttagagataaatgcttatatttttcacttatttgtctttgtagtcgattctcacatgccagaacgcgcgcg |
5468893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 14319158 - 14319237
Alignment:
| Q |
42 |
aatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaatt |
122 |
Q |
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| T |
14319158 |
aatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaat-aagcattctcaggaaaatcaaaatt |
14319237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 9590394 - 9590476
Alignment:
| Q |
71 |
atgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaa |
154 |
Q |
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| T |
9590394 |
atgactttgaaagcaaaatgactaatacat-attctaaaaaaaatccaaattcagaatcagaattggggattcaacaaagaaaa |
9590476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 9590532 - 9590578
Alignment:
| Q |
194 |
tacatcaaacattatatcttaattagaggtaaatgcttatatttttcactt |
244 |
Q |
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| T |
9590532 |
tacatcaaacattatagctta----gaggtaaatgcttatatttttcactt |
9590578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 38572135 - 38572176
Alignment:
| Q |
57 |
tataaagcaaaacaatgactttgtaagcacaataactaataa |
98 |
Q |
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| T |
38572135 |
tataaagcaaaacagtgactttgtaagtacaataactaataa |
38572176 |
T |
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