View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7940_low_9 (Length: 254)

Name: NF7940_low_9
Description: NF7940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7940_low_9
NF7940_low_9
[»] chr5 (12 HSPs)
chr5 (1-239)||(30479882-30480121)
chr5 (12-228)||(30680703-30680920)
chr5 (12-186)||(30056343-30056517)
chr5 (12-228)||(30432438-30432658)
chr5 (138-239)||(30340316-30340418)
chr5 (18-136)||(37345111-37345230)
chr5 (1-118)||(30716861-30716979)
chr5 (12-118)||(30746133-30746240)
chr5 (149-228)||(30716980-30717060)
chr5 (57-184)||(30245938-30246066)
chr5 (149-228)||(30746052-30746132)
chr5 (157-228)||(40676536-40676608)
[»] chr4 (1 HSPs)
chr4 (1-223)||(20302911-20303134)
[»] chr1 (1 HSPs)
chr1 (95-163)||(7585400-7585468)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30480121 - 30479882
Alignment:
Q  1 tttcacgtgttcatgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaaagttggagtttcatgttcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30480121 tttcacgtgttcatgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaaagttggagtttcaagttcga 30480022  T
Q  101 tcaggggaaacaccaatagccagaattggcgacgtttttgagcatattttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctc 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  30480021 tcaggggaaacaccaatagccagaattggcgacgttgttgagcatattttaggagtgatgtttgctgctgaagatttcaatttcctttaactgatatctc 30479922  T
Q  200 tttactggttatcgttggtttccaggtaaacatagttcat 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30479921 tttactggttatcgttggtttccaggtaaacatagttcat 30479882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 30680703 - 30680920
Alignment:
Q  12 catgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaa-agttggagtttcatgttcgatcaggggaaa 110  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || ||||||||| | ||||||||| || ||| ||||||||||||||||||||||||||    
T  30680703 catgaaaatatgcaggtgatggtccttcatttatgaaatagccctttcatgtataatatatttatgaaagagtcggagtttcatgttcgatcaggggaaa 30680802  T
Q  111 caccaatagccagaattggcgacgtttttgagcatattttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctctttactggtt 209  Q
    ||||||||||| |||||||||||||| || || | || |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  30680803 caccaatagccggaattggcgacgttgttaag-aaatattaggaatgaagtttgctgctgaagatttcaatttcctttaactgatagctctttgctggtt 30680901  T
Q  210 atcgttggtttccaggtaa 228  Q
    || |||  |||| ||||||    
T  30680902 atggttaatttcaaggtaa 30680920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 30056517 - 30056343
Alignment:
Q  12 catgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaa-agttggagtttcatgttcgatcaggggaaa 110  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || ||||||||| | ||||||||| || ||| ||| ||||||||||||||||||||||    
T  30056517 catgaaaatatgcaggtgatggtccttcatttatgaaatagccctttcatgtataatatatttatgaaagagtcggaatttcatgttcgatcaggggaaa 30056418  T
Q  111 caccaatagccagaattggcgacgtttttgagcatattttaggagtgaagtttgctgctgaagatttcaatttcct 186  Q
    |||||||||||||||||||||||||| || |||| || |||||| |||||||||||||||||||||||||||||||    
T  30056417 caccaatagccagaattggcgacgttgttaagca-atattaggaatgaagtttgctgctgaagatttcaatttcct 30056343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 30432658 - 30432438
Alignment:
Q  12 catgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatga-aata--tttatggaa-agttggagtttcatgttcgatcagggg 107  Q
    ||||||||||||||||| ||| ||||||||||||||||||| |  ||||||||| | ||||  |||||| || ||| |||||||||||||||||||||||    
T  30432658 catgaaaatatgcaggtgatggtccttcatttatgaaatagccgtttcatgtataataatacatttatgaaagagtcggagtttcatgttcgatcagggg 30432559  T
Q  108 aaacaccaatagccagaattggcgacgtttttgagcatattttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctctttactg 206  Q
    ||||||||||||||||||||||||||||| || |||| || |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||    
T  30432558 aaacaccaatagccagaattggcgacgttgttaagca-atattaggaatgaagtttgctgctgaagatttcaatttcctttaactgatagctctttgctg 30432460  T
Q  207 gttatcgttggtttccaggtaa 228  Q
    ||||| |||  |||| ||||||    
T  30432459 gttatggttaatttcaaggtaa 30432438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 30340316 - 30340418
Alignment:
Q  138 ttgagcatattttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctctttactggttatcgttggtttccaggtaaacatagtt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  30340316 ttgagcatattttaggagtgaagtttgctgctgaagatttcaatttcctttaactgatatctctttgctggttatcgttggtttccaggtaaacatagtt 30340415  T
Q  237 cat 239  Q
    |||    
T  30340416 cat 30340418  T

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Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 37345230 - 37345111
Alignment:
Q  18 aatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaa-agttggagtttcatgttcgatcaggggaaacaccaa 116  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||||||| | ||||| ||| || |||  |||||||||||||||||||||||||||||||    
T  37345230 aatatgcaggtgatggtccttcatttatgaaatagccctttcatgtataatatattaatgcaagagtcagagtttcatgttcgatcaggggaaacaccaa 37345131  T
Q  117 tagccagaattggcgacgtt 136  Q
    |||||||||||||| |||||    
T  37345130 tagccagaattggctacgtt 37345111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30716861 - 30716979
Alignment:
Q  1 tttcacgtgttcatgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaa-agttggagtttcatgttcg 99  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||| | ||||||||| || ||| |||||||||||||||    
T  30716861 tttcatgtattcatgaaaatatgcaggtgatggtccttcatttatgaaatagccctttcatgtataatatatttatgaaagagtcggagtttcatgttcg 30716960  T
Q  100 atcaggggaaacaccaata 118  Q
    |||| ||||||||||||||    
T  30716961 atcacgggaaacaccaata 30716979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 30746240 - 30746133
Alignment:
Q  12 catgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaa-agttggagtttcatgttcgatcaggggaaa 110  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || ||||||||| | ||||||||| || ||| ||||||||||||| ||||||||||||    
T  30746240 catgaaaatatgcaggtgatggtccttcatttatgaaatagccctttcatgtataatatatttatgaaagagtcggagtttcatgtttgatcaggggaaa 30746141  T
Q  111 caccaata 118  Q
    ||||||||    
T  30746140 caccaata 30746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 30716980 - 30717060
Alignment:
Q  149 ttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctctttactggttatcgttggtttccaggtaa 228  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||  |||| ||||||    
T  30716980 ttaggaatgaagtttgctgctgaagatttcaatttcctttaactgatagctctttgctggttatggttaatttcaaggtaa 30717060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 30245938 - 30246066
Alignment:
Q  57 ttcatgtatgaaatatttatggaa-agttggagtttcatgttcgatcaggggaaacaccaatagccagaattggcgacgtttttgagcatattttaggag 155  Q
    ||||||||||| || ||||||||| ||||||  ||||| |||  |||||   |||||||||||  ||||||||||||  || || |||||||||| ||||    
T  30245938 ttcatgtatgagatgtttatggaagagttggcatttcaagtttaatcagcctaaacaccaatattcagaattggcgattttcttaagcatatttttggag 30246037  T
Q  156 tgaagtttgctgctgaagatttcaatttc 184  Q
    | ||||||||||| |||| ||||||||||    
T  30246038 taaagtttgctgcagaagttttcaatttc 30246066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 30746132 - 30746052
Alignment:
Q  149 ttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctctttactggttatcgttggtttccaggtaa 228  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||| |||  |||| ||||||    
T  30746132 ttaggaatgaagtttgctgctgaagatatcaatttcctttaactgatagctctttgctggttatggttaatttcaaggtaa 30746052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 40676608 - 40676536
Alignment:
Q  157 gaagtttgctgctgaagatttcaatttccttt-actgatatctctttactggttatcgttggtttccaggtaa 228  Q
    |||||||||| | |||| ||| |||||||||| |||||||| ||||| |||||||| ||| ||||| ||||||    
T  40676608 gaagtttgcttcggaagttttgaatttcctttaactgatatatcttttctggttatagttagtttcaaggtaa 40676536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20302911 - 20303134
Alignment:
Q  1 tttcacgtgttcatgaaaatatgcaggttatgatccttcatttatgaaatagtcccttcatgtatgaaatatttatggaaagttggagtttcatgttcga 100  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  20302911 tttcatgtgttcatgaaaatatgcaggttatggttcttcatttatgaaatagtcccttcatgtatgaaatatttatggaaagttggagttacaagttcga 20303010  T
Q  101 tcaggggaaacaccaatagccagaattggcgacgtttttgagcatattttaggagtgaagtttgctgctgaagatttcaatttccttt-actgatatctc 199  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  20303011 tcaggggaaacaccaatagccagaattggtgatgttgttgagcatattttaggagtgaaggttgctgctgaagatttcaatttcctttaactgatatctc 20303110  T
Q  200 tttactggttatcgttggtttcca 223  Q
    ||||||||||||||||||||||||    
T  20303111 tttactggttatcgttggtttcca 20303134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 7585400 - 7585468
Alignment:
Q  95 gttcgatcaggggaaacaccaatagccagaattggcgacgtttttgagcatattttaggagtgaagttt 163  Q
    |||| |||| |||||||| ||||||||| |||||| || ||| |  |||||||| ||||||||||||||    
T  7585400 gttcaatcaagggaaacatcaatagccaaaattggtgatgttgtcaagcatattctaggagtgaagttt 7585468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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