View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7941_low_1 (Length: 388)
Name: NF7941_low_1
Description: NF7941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7941_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 38581058 - 38580698
Alignment:
| Q |
17 |
taatcaactcaaataataatcctacagttttttgtcttcttctgtttttggttacttataacttctgtataataggaaaacgtgtgatccattctgagtt |
116 |
Q |
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| T |
38581058 |
taatcaactcaaataataatcctacagttttttgtcttcttctgtttttggttacttataacttctgtataataggaaaacgtgtgatccattctgagtt |
38580959 |
T |
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| Q |
117 |
gactgagcgtaaatacgttgaggtccaacaagctctaggtgctgctgaagctatggtaataactaataaccgcggatcatttggggtttataattacata |
216 |
Q |
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| T |
38580958 |
gactgagcgtaaatatgttgaggtccaacaagctctaggtgctgctgaagctatggtaataactaataactgcggatcatttggggtttataattacata |
38580859 |
T |
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| Q |
217 |
ttaccatttatcattgagtttgtttacgtattgcaccttttaaaattttacaggatgttgatcactgtgaaccaaatagcaagtccaaaaaggctggtta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38580858 |
ttaccatttatcattgagtttgtttacgtattgcaccttttaaaattttacaggatgttgatcactgtgaaccaaatagcaagtccaaaaaagctggtta |
38580759 |
T |
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| Q |
317 |
ccgtatgagtggtaaaggctattaatattttgtatcctaccacaaactctgtagctttctt |
377 |
Q |
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| T |
38580758 |
ccgtatgagtggtaaaggctattaatattttgtatcctaccacaaactctgtagctttctt |
38580698 |
T |
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