View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7941_low_5 (Length: 242)
Name: NF7941_low_5
Description: NF7941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7941_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 40310719 - 40310522
Alignment:
| Q |
17 |
acttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggta |
116 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
40310719 |
acttttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggta |
40310620 |
T |
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| Q |
117 |
agtaacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40310619 |
agtaacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40310522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 40320795 - 40320598
Alignment:
| Q |
17 |
acttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggta |
116 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
40320795 |
acttttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggta |
40320696 |
T |
|
| Q |
117 |
agtaacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40320695 |
agtaacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40320598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 40330261 - 40330064
Alignment:
| Q |
17 |
acttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggta |
116 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
40330261 |
acttttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggta |
40330162 |
T |
|
| Q |
117 |
agtaacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40330161 |
agtaacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40330064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 40313695 - 40313586
Alignment:
| Q |
17 |
acttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggta |
116 |
Q |
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|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||| |
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| T |
40313695 |
acttttaatcaagactttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctcttgta |
40313596 |
T |
|
| Q |
117 |
agtaacatat |
126 |
Q |
| |
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|| ||||||| |
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| T |
40313595 |
agcaacatat |
40313586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 40323771 - 40323662
Alignment:
| Q |
17 |
acttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||| |
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| T |
40323771 |
acttttaatcaagactttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctcttgta |
40323672 |
T |
|
| Q |
117 |
agtaacatat |
126 |
Q |
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|| ||||||| |
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| T |
40323671 |
agcaacatat |
40323662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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