View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7942_high_1 (Length: 822)
Name: NF7942_high_1
Description: NF7942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7942_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 657; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 18 - 689
Target Start/End: Complemental strand, 42616440 - 42615768
Alignment:
| Q |
18 |
ggatcattatcttgcctacccatttagaagtagtgagtaaagtttcaatctttgggaaatttgaggcagtggagtggaaaaagaagggaactatattttg |
117 |
Q |
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| T |
42616440 |
ggatcattatcttgcctacccatttagaagtagtgagtaaagtttcaatctttgggaaatttgaggcagtggagtggaaaaagaagggaactatattttg |
42616341 |
T |
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| Q |
118 |
gtgggtttggcatgttgtgttttggaagtgatatataatacaagaaagtgagtatatttgaagatcatcatattttgatattgagcattatttttt-agt |
216 |
Q |
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| T |
42616340 |
gtgggtttggcatgttgtgttttggaagtgatatataatacaagaaagtgagtatatttgaagatcatcatattttgatattgagcattatttttttagt |
42616241 |
T |
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| Q |
217 |
atttgggtccttctaattgattcctgatgatagcaacatagattagaatcaagtgaggtttgacaaaatgacaatgagatagttgttaaagttagtatag |
316 |
Q |
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| T |
42616240 |
atttgggtccttctaattgattcctgatgatagcaacatagattagaatcaagcgaggtttgacaaaatgacaatgagatagttgttaaagttagtatag |
42616141 |
T |
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| Q |
317 |
gggaaagaagggtaggcttcatgtgtggccaaagggactttttgaatgaggaaaagtgcaagaagtaaagtccaaattaatgatgcatagtagcaattgg |
416 |
Q |
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| T |
42616140 |
gggaaagaagggtaggcttcatgtgtggccaaagggactttttgaatgaggaaaagtgcaagaagtaaagtccaaattaatgatgcatagtagcaattgg |
42616041 |
T |
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| Q |
417 |
aagggagtattttggagaataaatggttaggtaattgcttatctgtgcttgtcaattttaggccactatttgcatatgaggatatggtacatctatgttt |
516 |
Q |
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| T |
42616040 |
aagggagtattttggagaataaatggttaggtaattgcttatctgtgcttgtcaattttaggccactatttgcatatgaggatatggtacatctatgttt |
42615941 |
T |
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| Q |
517 |
ggtcttgttggtatgttacttcttttttgtttatgtaagttttcaaccattgaatgtgttgttttcgtttatcgggtgttaattcgatgataagagtttg |
616 |
Q |
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| T |
42615940 |
ggtcttgttggtatgttacttcttttttgtttatgtaagttttcaactattgaatgtgttgttttcgtttatcgggtgttaattcgatgataagagtttg |
42615841 |
T |
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| Q |
617 |
atattaaaacttcaagcagccgagttcaaatttcatctagaatagttgtcagtatcactttaattaataataa |
689 |
Q |
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| T |
42615840 |
atattaaaacttcaagcagccgagttcaaatttcatctagaatagttgtcagtatcactttaattaataataa |
42615768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 720 - 802
Target Start/End: Complemental strand, 42615737 - 42615655
Alignment:
| Q |
720 |
aaatatattgttcctgtgattggagcttggaaggggagggtcatgatgtgggtaagagacaaaaggaattggcaaggaatatt |
802 |
Q |
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| T |
42615737 |
aaatatattgttcctgtgattggagcttggaaggggagggtcatgatgtgggtaagagacaaaaggaattggcaaggaatatt |
42615655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 422 - 477
Target Start/End: Original strand, 10208553 - 10208608
Alignment:
| Q |
422 |
agtattttggagaataaatggttaggtaattgcttatctgtgcttgtcaattttag |
477 |
Q |
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| T |
10208553 |
agtattttggagaataaatggttaggtaattgcttatacgtgcatgtcaattttag |
10208608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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