View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7942_high_3 (Length: 244)
Name: NF7942_high_3
Description: NF7942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7942_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38921357 - 38921125
Alignment:
| Q |
1 |
aatgaaatgcagaaaaagtttgcagtctgcttaggcataaagaagaccaatgatatgacgttacaacgtagtacttctcatgcttaagttttgttactag |
100 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38921357 |
aatgaaatgcataaaaagtttgcaggctgcttacgcataaagaagaccaatgatgtgacgttacaacgtagtacttctcatgcttaagttttgttaccag |
38921258 |
T |
|
| Q |
101 |
gatggataggataacaagcttgaagccttgtgacgtcggaagaaaatcaattggtagt--nnnnnnnctgcacatgtgtaaaagaaagtcttcaaaagca |
198 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
38921257 |
gatcgataggataacaagcttgaagccttgtgacgtcagaagaaaatcaattggtagtaaaaaaaaaatgcatatgtgtaaaagaaagtcttcaaaagca |
38921158 |
T |
|
| Q |
199 |
atggttgtttagtaattatatcaaaatggatgt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38921157 |
atggttgtttagtaattatatcaaaatggatgt |
38921125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 39017278 - 39017329
Alignment:
| Q |
2 |
atgaaatgcagaaaaagtttgcagtctgcttaggcataaagaagaccaatga |
53 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
39017278 |
atgaaatgcagaaaaagtttgcaggttgcttacgcatagagaagaccaatga |
39017329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 42237177 - 42237315
Alignment:
| Q |
89 |
ttttgttactaggatggataggataacaagcttgaagccttgtgacgtcggaagaaaatcaattggtagtnnnnnnnctgcacatgtgtaaaagaaagtc |
188 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
42237177 |
ttttgttatcaggatgaaaaggataacaagcttgaagccttgtgacgtacgaagcaaatcaattaatagtaaaattt-tgcacatgtgtaaaaaaaagtc |
42237275 |
T |
|
| Q |
189 |
ttcaaaagcaatggttgtttagtaattatatcaaaatggat |
229 |
Q |
| |
|
|| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
42237276 |
ttaaaaaa-aagggttgtttagtaattatatcaaaatggat |
42237315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 30496676 - 30496816
Alignment:
| Q |
89 |
ttttgttactaggatggataggataacaagcttgaagccttgtgacgtcggaagaaaatcaattggtagtnnnnnnnct-gcacatgtgtaaaagaaagt |
187 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||||||| ||| ||| |||| |||||||||| | |||| ||||||||||||||| |
|
|
| T |
30496676 |
ttttgttatcaggatggatatgataacaagcttgcagccttgtga-gtcaaaagcaaattaattggtagtaaaaataattgcac-tgtgtaaaagaaagt |
30496773 |
T |
|
| Q |
188 |
cttcaaaagcaatggttgtttagtaattatatcaaaatggatg |
230 |
Q |
| |
|
|| |||||| | || ||||||||||||||||||||||||||| |
|
|
| T |
30496774 |
ttttaaaagcgagggctgtttagtaattatatcaaaatggatg |
30496816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University