View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7942_low_2 (Length: 353)
Name: NF7942_low_2
Description: NF7942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7942_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 7996723 - 7996376
Alignment:
| Q |
1 |
ttgatcctgatgatggtatggtaaatccataagagaaatgctaaggacattattatatcatcatatccaattagattcaataggcagatgaacatgcatg |
100 |
Q |
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| T |
7996723 |
ttgatcctgatgatggtatggtaaatccataagagaaatgctaaggacattattatatcatcatatccaattagattcaataggcagatgaaaatgcatg |
7996624 |
T |
|
| Q |
101 |
tatacatcatatcaatgatgaagaaaatcatatatattttgatccacatcctcttatgcaaatttgatatgaaattcaaactctagtttttacaagaaat |
200 |
Q |
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| T |
7996623 |
tatacatcatatcaatgatgaagaaaatcatttatattttgatccacatcctcttatgcaaatttgatatgaaattcaaactctattttttacaagaaat |
7996524 |
T |
|
| Q |
201 |
agcactagctaacatcaattgaattcaaaatttgagcaaaacacatcatttataataaatcacaggtttatttgaattggaatcccacatgcctccttcc |
300 |
Q |
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| T |
7996523 |
agca----ctaacatcaattgaattcaaaatttgagcaaaacacatcatttataataaatcacaggtttatttgaattagaatcccacatgcctccttcc |
7996428 |
T |
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| Q |
301 |
ttcaaatactcaacatatcttgcaaattcaggctttgatgttgctttcttct |
352 |
Q |
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| T |
7996427 |
ttcaaatactcaacatatcttgcaaattcaggctttgatgttgctttcttct |
7996376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 8957761 - 8957460
Alignment:
| Q |
6 |
cctgatgatggtatggtaaatccataagagaaatgctaaggacattattatatcatcatatccaattagattcaataggcagatgaacatgcatgtatac |
105 |
Q |
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| T |
8957761 |
cctgatgatggtaaggtaaatccataagagaaatgctaaggacattattacatcatcatatccaattagattcaataggcagatgaacatgcatgtatac |
8957662 |
T |
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| Q |
106 |
atcatatcaatgatgaagaaaatcatatatattttgatccacatcctcttatgcaaatttgatatgaaattcaaactctagtttttacaagaaatagcac |
205 |
Q |
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| T |
8957661 |
atcatatcaatgatgaagaaaatcatatatattttgatccacatcctcttatgcaaatttgatatgaaattcaaactctagtttttacaagaaatagca- |
8957563 |
T |
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| Q |
206 |
tagctaacatcaattgaattcaaaatttgagcaaaacacatcatttataataaatcacaggtttatttgaattggaatcccacatgcctccttccttcaa |
305 |
Q |
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| T |
8957562 |
---ctaacataaattgaattcaaaatttgagcaaaacacatcatttataataaatcacaggtttatttgaa----------acatgcctccttccttcaa |
8957476 |
T |
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| Q |
306 |
atactcaacatatctt |
321 |
Q |
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| T |
8957475 |
atactcaacatatctt |
8957460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 32780938 - 32781005
Alignment:
| Q |
265 |
ggtttatttgaattggaatcccacatgcctccttccttcaaatactcaacatatcttgcaaattcagg |
332 |
Q |
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|||||||| ||||| |||||||||||||||||||||| | |||||||| ||| |||||||||||||| |
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| T |
32780938 |
ggtttattggaattcaaatcccacatgcctccttccttaagatactcaatataccttgcaaattcagg |
32781005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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