View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7942_low_4 (Length: 228)
Name: NF7942_low_4
Description: NF7942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7942_low_4 |
 | |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 38921817 - 38921595
Alignment:
| Q |
6 |
aagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttg |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38921817 |
aagtgatattgttagaagtggaattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttg |
38921718 |
T |
|
| Q |
106 |
gtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38921717 |
gtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattt |
38921618 |
T |
|
| Q |
206 |
tggtccctcatctatgagtataa |
228 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
38921617 |
tggtccctcatctatgagtataa |
38921595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 35968510 - 35968617
Alignment:
| Q |
111 |
catgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtc |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
35968510 |
catgagttcatgagtagagttggagaagatgaaggaattcggggccttga----------agaagatgatggcggaaacatgattgttgtcattttggtc |
35968599 |
T |
|
| Q |
211 |
cctcatctatgagtataa |
228 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
35968600 |
cctcatctatgagtataa |
35968617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 35968447 - 35968504
Alignment:
| Q |
6 |
aagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttg |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35968447 |
aagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaagtttg |
35968504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 41739984 - 41739762
Alignment:
| Q |
6 |
aagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttg |
105 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
41739984 |
aagtgatattgttagaagtgagattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgctg |
41739885 |
T |
|
| Q |
106 |
gtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattt |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
41739884 |
gtgagcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaaaaagatgatggcagaaacatgattgttgtcattt |
41739785 |
T |
|
| Q |
206 |
tggtccctcatctatgagtataa |
228 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
41739784 |
tgatccctcatctatgagtataa |
41739762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 38516954 - 38516924
Alignment:
| Q |
53 |
aatcaattttgaattttgattttgaatatga |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38516954 |
aatcaattttgaattttgattttgaatatga |
38516924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Original strand, 45291650 - 45291680
Alignment:
| Q |
53 |
aatcaattttgaattttgattttgaatatga |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45291650 |
aatcaattttgaattttgattttgaatatga |
45291680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 45295793 - 45295878
Alignment:
| Q |
65 |
attttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgg |
151 |
Q |
| |
|
||||||| | |||||||||| | |||| | || | |||||||||| |||||||| ||||| | |||||||||||||| ||||||||| |
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|
| T |
45295793 |
attttgaatatgaatatgataatttctagtcagatgtgttggtgaacatgagtttatgagcactgttggagaagatg-aggaattgg |
45295878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 30830288 - 30830067
Alignment:
| Q |
6 |
aagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttg |
105 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30830288 |
aagtaatattgttagaagtgagattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttg |
30830189 |
T |
|
| Q |
106 |
gtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattt |
205 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
30830188 |
gtgagcatgagttcatgagtagtgttgaagaagatgaaggaattgagggcattgaagaagattgaaaaagatgatggcagaaacatgattg-tgtcattt |
30830090 |
T |
|
| Q |
206 |
tggtccctcatctatgagtataa |
228 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30830089 |
tggtccctcatctatgagtataa |
30830067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 52190144 - 52190278
Alignment:
| Q |
94 |
gcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatga |
193 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52190144 |
gcataggtattggtgagcatgagttcatgagtagtgttggagaagatgaaggaattgagggcattgaagaagattgaagaagatgaaggcagaaacatga |
52190243 |
T |
|
| Q |
194 |
ttgttgtcattttggtccctcatctatgagtataa |
228 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52190244 |
ttgttgtcattttggtccctcgtctatgagtataa |
52190278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 31409688 - 31409574
Alignment:
| Q |
53 |
aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattggg |
152 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||| | |||||||| ||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
31409688 |
aatcaattttgaattttgattttgaatatcatcatttctgggtagaggtgttgttgagcatgagtttatgaatagtgttggagaagatgaaggaattgga |
31409589 |
T |
|
| Q |
153 |
ggcattgaagaagat |
167 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31409588 |
ggcattgaagaagat |
31409574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35063329 - 35063543
Alignment:
| Q |
6 |
aagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
35063329 |
aagtgatattgttagaagtgggattttataaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatcatttatgggcataggtgttg |
35063428 |
T |
|
| Q |
106 |
gtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattt |
205 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35063429 |
gtgagcatg--------agtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgttgtcattt |
35063520 |
T |
|
| Q |
206 |
tggtccctcatctatgagtataa |
228 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
35063521 |
tggtccctcgtctatgagtataa |
35063543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 49917712 - 49917636
Alignment:
| Q |
75 |
tgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgg |
151 |
Q |
| |
|
||||||||| | ||||||||| || |||||| | ||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
49917712 |
tgaatatgaaaatttctgggcagagatgttggataaaatgagtttatgagttgtgttggagaagaagaaggaattgg |
49917636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 17864490 - 17864624
Alignment:
| Q |
94 |
gcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatga |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17864490 |
gcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaaggaattgagaacattgaagaagattgaagaagatgaaggcagaaacatga |
17864589 |
T |
|
| Q |
194 |
ttgttgtcattttggtccctcatctatgagtataa |
228 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| |
|
|
| T |
17864590 |
ttgctgtcattttggtccctagtctatgagtataa |
17864624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 19802090 - 19801946
Alignment:
| Q |
53 |
aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattggg |
152 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| | |||| ||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19802090 |
aatcaatttcgaatttagattttgaatatgataatttctaggcataggtgttggtgagcatgagt--------agtgatggagaagatgaaggaattggg |
19801999 |
T |
|
| Q |
153 |
ggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctca |
215 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
19801998 |
ggcattgaagaag-ttgaa---------ggcagaaacataattgtggtcattttggtccctca |
19801946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 9448463 - 9448566
Alignment:
| Q |
53 |
aatcaattttgaattttgattt------tgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaagga |
146 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||| | || | |||||||||| |||||||| ||||| | |||||||||||||| |||| |
|
|
| T |
9448463 |
aatcaattttgaattttgattttgaatatgaatatgataatttctagacaaatgtgttggtgaacatgagtttatgagcactgttggagaagatg-agga |
9448561 |
T |
|
| Q |
147 |
attgg |
151 |
Q |
| |
|
||||| |
|
|
| T |
9448562 |
attgg |
9448566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 4754614 - 4754648
Alignment:
| Q |
7 |
agtgatattgttagaagtgggattttgtaaagttt |
41 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4754614 |
agtgaaattgttagaagtgggattttgtaaagttt |
4754648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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