View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7943_high_1 (Length: 830)

Name: NF7943_high_1
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7943_high_1
NF7943_high_1
[»] chr4 (9 HSPs)
chr4 (323-773)||(35390607-35391057)
chr4 (15-321)||(35390180-35390484)
chr4 (253-309)||(18194746-18194802)
chr4 (261-321)||(30804348-30804408)
chr4 (245-286)||(26736585-26736626)
chr4 (230-286)||(15545071-15545127)
chr4 (235-286)||(2917620-2917671)
chr4 (291-321)||(21219621-21219651)
chr4 (232-266)||(47286604-47286638)
[»] chr7 (11 HSPs)
chr7 (473-704)||(3990848-3991079)
chr7 (260-321)||(33255039-33255100)
chr7 (233-320)||(20080198-20080285)
chr7 (235-286)||(46357785-46357836)
chr7 (232-320)||(38663318-38663405)
chr7 (235-286)||(46912927-46912978)
chr7 (235-309)||(26050085-26050159)
chr7 (232-286)||(36616865-36616919)
chr7 (232-286)||(42896849-42896903)
chr7 (232-286)||(46457680-46457734)
chr7 (245-306)||(8256536-8256597)
[»] chr8 (11 HSPs)
chr8 (243-322)||(2148313-2148392)
chr8 (247-321)||(24557003-24557077)
chr8 (233-286)||(35702154-35702207)
chr8 (262-309)||(32977351-32977398)
chr8 (229-321)||(36051178-36051270)
chr8 (255-321)||(10381362-10381428)
chr8 (231-316)||(45486311-45486395)
chr8 (231-266)||(7351392-7351427)
chr8 (235-286)||(16428095-16428146)
chr8 (230-320)||(11462728-11462818)
chr8 (232-321)||(7681462-7681551)
[»] chr6 (10 HSPs)
chr6 (235-321)||(30705214-30705300)
chr6 (232-321)||(16517013-16517102)
chr6 (232-320)||(1462487-1462575)
chr6 (228-320)||(16693561-16693652)
chr6 (263-321)||(30702647-30702702)
chr6 (260-321)||(1975352-1975413)
chr6 (264-321)||(16461728-16461785)
chr6 (246-290)||(16503749-16503793)
chr6 (232-316)||(18816826-18816909)
chr6 (233-286)||(6174375-6174428)
[»] scaffold0002 (2 HSPs)
scaffold0002 (253-309)||(286244-286300)
scaffold0002 (253-309)||(292600-292656)
[»] chr2 (9 HSPs)
chr2 (231-321)||(8974398-8974488)
chr2 (233-321)||(7700258-7700346)
chr2 (232-321)||(37623603-37623691)
chr2 (245-309)||(18703758-18703822)
chr2 (232-300)||(39018609-39018677)
chr2 (245-321)||(27447803-27447879)
chr2 (232-282)||(9929345-9929395)
chr2 (61-145)||(27449604-27449692)
chr2 (253-282)||(26580338-26580367)
[»] scaffold0311 (1 HSPs)
scaffold0311 (231-321)||(938-1028)
[»] chr1 (10 HSPs)
chr1 (234-321)||(29703091-29703178)
chr1 (232-321)||(47631163-47631253)
chr1 (232-320)||(22787424-22787511)
chr1 (235-286)||(33403772-33403823)
chr1 (235-286)||(38741322-38741373)
chr1 (232-286)||(37188220-37188274)
chr1 (238-299)||(10638031-10638092)
chr1 (233-286)||(11943666-11943719)
chr1 (260-321)||(23347802-23347863)
chr1 (245-282)||(25586031-25586068)
[»] chr3 (10 HSPs)
chr3 (233-286)||(40154754-40154807)
chr3 (257-321)||(395994-396058)
chr3 (231-320)||(28210879-28210967)
chr3 (232-320)||(26557598-26557685)
chr3 (232-316)||(26903064-26903147)
chr3 (232-316)||(36617893-36617976)
chr3 (231-266)||(27237342-27237377)
chr3 (235-286)||(50386174-50386225)
chr3 (232-286)||(22418862-22418916)
chr3 (231-320)||(2125719-2125807)
[»] chr5 (9 HSPs)
chr5 (233-320)||(423987-424074)
chr5 (264-321)||(34751176-34751233)
chr5 (231-287)||(26326994-26327050)
chr5 (230-286)||(34226013-34226069)
chr5 (231-286)||(18862784-18862839)
chr5 (232-266)||(13475554-13475588)
chr5 (263-321)||(33824833-33824891)
chr5 (245-286)||(3059307-3059348)
chr5 (260-321)||(5568958-5569019)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 323 - 773
Target Start/End: Original strand, 35390607 - 35391057
Alignment:
Q  323 aaccacgatgaacaattctacataccaatataagcaattctacataacacaaatagccaccaataagcaattttctacacagtaagcaattatcatcaaa 422  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35390607 aaccacgatgaacaattctatataacaatataagcaattctacataacacaaatagccaccaataagcaattttctacacagtgagcaattatcatcaaa 35390706  T
Q  423 caacagaaaattagcatcactaaaacgatacatctgatgttcattgtaacttatactttgctaagtataaatattccatcggaagttccattgttcattg 522  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  35390707 ccacagaaaattagcatcactaaaacgatacatctgttgttcattgtaacttatactttgctaagtgcaaatattccatcggaagttccattgttcattg 35390806  T
Q  523 aaattttatcggatgaaaacgaaatctaatttcacattagcagcagagtaagcaattatatgtatccctgctgctttccagttacacagatcatcacctt 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35390807 aaattttatcggatgaaaacgaaatctaatttcacattagcagcagagtaagcaattatatgtatccctgctgctttccagttatacagatcatcacctt 35390906  T
Q  623 caagtcccgtttcaaagtaccgaaaaagttgatgaataataagtgacaaagtgtagtttaaagttgtcaaatagagtacaggattattttcttcattctc 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35390907 caagtcccgtttcaaagtaccgaaaaagttgatgaataataagtgacaacgtgtagtttaaagttgtcaaatagagaacaggattattttcttcattctc 35391006  T
Q  723 agcttcattttgtccctctaatctcccccatttctcttccctccatccgac 773  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35391007 agcttcattttgtctctctaatctcccccatttctcttccctccatccgac 35391057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 35390180 - 35390484
Alignment:
Q  15 agagatgaagaaaatctaattttttggagtatactggccaaaatcccgaaattgtaaaatcttacaattacccccgaaatttgaggaaagacaaataccc 114  Q
    ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35390180 agagaagaagaaaatctaattttttggagtat-ctggccaaaaccccgaaattgtaaaatcttacaattacccccgaaatttgaggaaagacaaataccc 35390278  T
Q  115 ctcaaattataaaccgtcaggcaagttagtcactccttctaagttgatgacgtgtctgttaaatgttcatgtgacattgacagaatgtctgatgtatagt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  35390279 ctcaaattataaaccgtcaggcaagttagtcactccttctaagttgatgacgtgactgttaaatgttcatgtgacattgacagaatgtctgatgtacagt 35390378  T
Q  215 gacaagtcacatgtgggcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaat 314  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35390379 gacaagtcacatgt-ggcagggatggacccagacatttgatattagtgtggctaaaatttcaaagaaattatgatgtaaattatactaaaaataataaat 35390477  T
Q  315 aacattg 321  Q
    |||||||    
T  35390478 aacattg 35390484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 18194746 - 18194802
Alignment:
Q  253 gatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataa 309  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  18194746 gatattggtgtggctaaaatttcaaagaaactatgaactaaattatactaaaaataa 18194802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 30804348 - 30804408
Alignment:
Q  261 tgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||| | |||||| |||| |  |||||||||||||||||||||||||||||||    
T  30804348 tgtggctaaaatatgaaagaatctattaattaaattatactaaaaataataaataacattg 30804408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 26736626 - 26736585
Alignment:
Q  245 agacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  26736626 agacttttgatattggtgtggctaaaatatcaaagaaactat 26736585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 15545127 - 15545071
Alignment:
Q  230 ggcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||||| ||||||| |||||||||||||||| ||| || ||||| ||||||    
T  15545127 ggcaggggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactat 15545071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 2917620 - 2917671
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||| ||||||    
T  2917620 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactat 2917671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 21219651 - 21219621
Alignment:
Q  291 taaattatactaaaaataataaataacattg 321  Q
    |||||||||||||||||||||||||||||||    
T  21219651 taaattatactaaaaataataaataacattg 21219621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 47286604 - 47286638
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggc 266  Q
    |||||||||| ||||||||||||||||||||||||    
T  47286604 caggggcggatccagacatttgatattggtgtggc 47286638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 1e-77; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 473 - 704
Target Start/End: Original strand, 3990848 - 3991079
Alignment:
Q  473 ttatactttgctaagtataaatattccatcggaagttccattgttcattgaaattttatcggatgaaaacgaaatctaatttcacattagcagcagagta 572  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||| | ||    
T  3990848 ttatgcttggctaagtacaaatattccatcggaagttccattgttcatcaaaattttatcagatgcaaacgaaatctaatttcacattagcagcataata 3990947  T
Q  573 agcaattatatgtatccctgctgctttccagttacacagatcatcaccttcaagtcccgtttcaaagtaccgaaaaagttgatgaataataagtgacaaa 672  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||| |||| |||||| |||||||||     
T  3990948 agcaattatatgtatccctgctgctttcctgttatacagatcatcaccttcaagtcccgtttcaatataccgaaaaaattgaagaataacaagtgacaat 3991047  T
Q  673 gtgtagtttaaagttgtcaaatagagtacagg 704  Q
    ||||||| |||| |||||||| | ||||||||    
T  3991048 gtgtagtgtaaatttgtcaaacacagtacagg 3991079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 33255100 - 33255039
Alignment:
Q  260 gtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||| ||||| | |||||| ||||||  |||||||||||||||||||||||||||||||    
T  33255100 gtgtggcaaaaatataaaagaatctatgaattaaattatactaaaaataataaataacattg 33255039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 20080285 - 20080198
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    ||||||||| |||||||||  ||  ||||||||| ||||| | ||||||  |||||  |||||||||| |||||||||||||||||||    
T  20080285 aggggcggatccagacattgtattctggtgtggcaaaaatatgaaagaatttatgaattaaattatacaaaaaataataaataacatt 20080198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 46357785 - 46357836
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||||||||||    
T  46357785 gggcggatctagacatttgatattggtgtggcaaaactttcaaagaaactat 46357836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 38663405 - 38663318
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    |||||||||| | |||||||  ||||| ||||||| ||| ||| ||||||||||| ||  || ||||||||||||||||| ||||||||    
T  38663405 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatacaa-ttatactaaaaataatatataacatt 38663318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 46912927 - 46912978
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||| ||||||    
T  46912927 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactat 46912978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 26050085 - 26050159
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataa 309  Q
    ||||||| |||||||||| ||||  ||| |||||||||||  ||||||| || ||| |||||||| |||||||||    
T  26050085 gggcggatccagacatttaatatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataa 26050159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 36616865 - 36616919
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||| | |||||||||||||||||||||  ||| ||||||| |||||||    
T  36616865 caggggcggatctagacatttgatattggtgtggtaaaattttcaaacaaactat 36616919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 42896849 - 42896903
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||| | |||||||||||||||||||||| ||| ||| ||| |||||||    
T  42896849 caggggcggatctagacatttgatattggtgtggcaaaacttttaaaaaaactat 42896903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 46457680 - 46457734
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||| ||||||| |||||||||||||||| ||| || ||||| ||||||    
T  46457680 caggggcggatccagacagttgatattggtgtggcaaaatttgcaaagtaactat 46457734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 8256536 - 8256597
Alignment:
Q  245 agacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaa 306  Q
    |||||||||| ||| ||||||||||||||| ||||||| | | || ||||||||| ||||||    
T  8256536 agacatttgagattagtgtggctaaaattttaaagaaattttaatataaattatattaaaaa 8256597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 2148313 - 2148392
Alignment:
Q  243 ccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattga 322  Q
    ||||||||||||||||||||| |  ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  2148313 ccagacatttgatattggtgtagaaaaaatttcaaagaaactataatgcaaattatactaaaaataagaaataacattga 2148392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 24557077 - 24557003
Alignment:
Q  247 acatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||  ||||||  |||||||||||||||| || || ||||||||| |||||||||||||||||||||    
T  24557077 acatttgatatatgtgtggtaaaaatttcaaagaaacaataatttaaattatattaaaaataataaataacattg 24557003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 35702207 - 35702154
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  35702207 aggggcgaacccagacatttgatattggtgtggcaaaactttcaaagaaactat 35702154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 32977398 - 32977351
Alignment:
Q  262 gtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataa 309  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  32977398 gtggctaaaatttcaaagaaattatgatgcaaattatactaaaaataa 32977351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 36051178 - 36051270
Alignment:
Q  229 gggcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||||||||| | |||||||  || |||||||||| ||||| | ||||||  |||||  ||||||||| |||||||||||||||| ||||    
T  36051178 gggcaggggcggatctagacattatattttggtgtggcaaaaatatgaaagaatatatgaattaaattatagtaaaaataataaataatattg 36051270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 10381362 - 10381428
Alignment:
Q  255 tattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||| ||| |||||||||||||||||||| || ||||||| |||| ||||||||| || ||||||||    
T  10381362 tatttgtgaggctaaaatttcaaagaaacaataatgtaaactatattaaaaataagaagtaacattg 10381428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 45486395 - 45486311
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataa 316  Q
    ||||||||||| | |||||||  ||||| ||||||| ||| ||| ||||||||||| ||  |||||||||||||||||||| ||||    
T  45486395 gcaggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataat-aaaattatactaaaaataatatataa 45486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 7351392 - 7351427
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggc 266  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7351392 gcaggggcggatccagacatttgatattggtgtggc 7351427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 16428095 - 16428146
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| ||||||||||||||||| |||||| ||| ||||||| |||||||    
T  16428095 gggcggatccagacatttgatattgatgtggcaaaactttcaaataaactat 16428146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 230 - 320
Target Start/End: Original strand, 11462728 - 11462818
Alignment:
Q  230 ggcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    |||||||||| | | |||||||| ||||| ||||||| ||  ||| ||||||||||| ||  || |||||| |||||||||| ||||||||    
T  11462728 ggcaggggcgaatctagacatttcatattagtgtggcaaattttttaaagaaactataatagaagttatacaaaaaataatatataacatt 11462818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 7681551 - 7681462
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||| | ||||||||| |||  |||||| ||||||||||||||||  || ||  ||| |||| |||||| || |||||||||||    
T  7681551 caggggcggatctagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaactatattaaaaacaagaaataacattg 7681462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 30705214 - 30705300
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||||||| ||||||||||||| | || || |||||||||||||| ||||||  |||||||||||||||||| |||||||||||    
T  30705214 gggcggacccaaacatttgatattgatatgactgaaatttcaaagaaattatgattcaaattatactaaaaataagaaataacattg 30705300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 16517013 - 16517102
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||| |||||| |||||||||| ||| |||||||||| ||||||| ||||||| |||||| ||||||||||| ||| |||||||    
T  16517013 caggggcggatccagacctttgatattgttgttgctaaaatttgaaagaaagtatgatgcaaattaaactaaaaataagaaacaacattg 16517102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 1462487 - 1462575
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    |||||| |||||||||||||  || || |||||||| |||| | |||||| ||||||  ||||||||||||||||||||||||||||||    
T  1462487 caggggtggacccagacattgtattttagtgtggctgaaatatgaaagaatctatgaattaaattatactaaaaataataaataacatt 1462575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 16693652 - 16693561
Alignment:
Q  228 tgggcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    |||||||||||||| | |||||||| ||||| ||||||| ||| ||| ||||||||||| ||   ||||||||||||||||||| ||||||||    
T  16693652 tgggcaggggcggatctagacatttcatattagtgtggcaaaatttttaaagaaactataat-acaattatactaaaaataatatataacatt 16693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 30702647 - 30702702
Alignment:
Q  263 tggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| |||||||||||    
T  30702647 tggctaaaatttcaaagaaac---gatgcaaattatactaaaaataagaaataacattg 30702702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 1975413 - 1975352
Alignment:
Q  260 gtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||| |||||||| |||||||  || ||||||| |||| |||||||||||||||||||||    
T  1975413 gtgtggttaaaattttaaagaaaaaataatgtaaactatattaaaaataataaataacattg 1975352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 16461785 - 16461728
Alignment:
Q  264 ggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||||||||||| || ||| ||| |||| ||||||||| |||||||||||    
T  16461785 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataacattg 16461728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 16503749 - 16503793
Alignment:
Q  246 gacatttgatattggtgtggctaaaatttcaaagaaactatgatg 290  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||    
T  16503749 gacatttgatattgttgtggctaaaatttgaaagaaagtatgatg 16503793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 18816826 - 18816909
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataa 316  Q
    |||||||||| | |||||||  ||||| ||||||| ||| ||| ||||||||||| ||  |||||||||||||||||||| ||||    
T  18816826 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataat-aaaattatactaaaaataatatataa 18816909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 6174375 - 6174428
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||||| ||||||| |||||||||||||||| ||| || ||||| ||||||    
T  6174375 aggggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactat 6174428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 286300 - 286244
Alignment:
Q  253 gatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataa 309  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  286300 gatattggtgtggctaaaatttcaaagaaactatgaactaaattatactaaaaataa 286244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 292656 - 292600
Alignment:
Q  253 gatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataa 309  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  292656 gatattggtgtggctaaaatttcaaagaaactatgaactaaattatactaaaaataa 292600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 8974398 - 8974488
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||||||| |||||||||  || |||||||||| ||||| | |||||| ||||||  ||||||||||||||||| |||||||||||||    
T  8974398 gcaggggcggatccagacattgtattttggtgtggcaaaaatatgaaagaatctatgaattaaattatactaaaaattataaataacattg 8974488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 7700258 - 7700346
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||||| | | |||||||||||  |||||||||||||||||||||||| || ||||||| ||||  |||||||| |||||||||||    
T  7700258 aggggcggatctacacatttgatatatgtgtggctaaaatttcaaagaaacaataatgtaaactatataaaaaataagaaataacattg 7700346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 37623691 - 37623603
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||| ||||| |||||||||  || |||||||||| |||||  | ||||| ||||||  |||||||||||||||||||||||||||||||    
T  37623691 caggagcggatccagacattgtattttggtgtggcaaaaata-cgaagaatctatgaattaaattatactaaaaataataaataacattg 37623603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 18703822 - 18703758
Alignment:
Q  245 agacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataa 309  Q
    |||||||||||||  |||||||||||||||||||||||| || ||| ||| |||| |||||||||    
T  18703822 agacatttgatatacgtgtggctaaaatttcaaagaaacaataatgcaaactatattaaaaataa 18703758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 39018677 - 39018609
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatac 300  Q
    ||||||| || | ||| |||||||||||| ||||||||||||| |||||||||||||  ||||||||||    
T  39018677 caggggcagatctagagatttgatattggcgtggctaaaattttaaagaaactatgaactaaattatac 39018609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 27447879 - 27447803
Alignment:
Q  245 agacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||||  |||||||||||||||||||||||  || ||| | |||||  ||||||||| |||||| ||||    
T  27447879 agacatttgatatatgtgtggctaaaatttcaaagaaaaaataatgcagattatgttaaaaataagaaataatattg 27447803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 9929395 - 9929345
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaa 282  Q
    ||||||| |||||| ||||||||| |||||||||| ||| |||||||||||    
T  9929395 caggggcagacccaaacatttgattttggtgtggcaaaactttcaaagaaa 9929345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 27449692 - 27449604
Alignment:
Q  61 cgaaattgtaaaatcttacaatta--cccccgaaatttgaggaaagacaaata--cccctcaaattataaaccgtcaggcaagttagtc 145  Q
    ||||||||||||||||| ||||||  || | |||||||||| |||||||||||  ||| ||||| | |||||| |||| ||||||||||    
T  27449692 cgaaattgtaaaatcttgcaattactcctctgaaatttgagaaaagacaaatactcccatcaaactgtaaaccatcagacaagttagtc 27449604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 26580338 - 26580367
Alignment:
Q  253 gatattggtgtggctaaaatttcaaagaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  26580338 gatattggtgtggctaaaatttcaaagaaa 26580367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 1028 - 938
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||| |||| | ||| |||||||||  ||||| |||||||||||||||||| |||| | ||| |||||||||||||| |||||||||||    
T  1028 gcagggacggatctagatatttgatatacgtgtgactaaaatttcaaagaaacaatgacgaaaactatactaaaaataagaaataacattg 938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 29703178 - 29703091
Alignment:
Q  234 ggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||| |||||||||  || || ||||||| ||||| | ||||||  |||||  |||||||||||||||||||||||||||||||    
T  29703178 ggggcggatccagacattgtattttagtgtggcaaaaatatgaaagaatttatgaattaaattatactaaaaataataaataacattg 29703091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 47631163 - 47631253
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaa-ataataaataacattg 321  Q
    |||||||||| |||||||||  || |||||||||| ||||| | ||||||  |||||  |||||||||| |||| ||||||||||||||||    
T  47631163 caggggcggatccagacattgtattttggtgtggcaaaaatatgaaagaatttatgaattaaattatacaaaaaaataataaataacattg 47631253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 22787424 - 22787511
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    |||||||||| | |||||| | ||||| ||||||| ||| ||| ||||||||||| ||  || ||||||||||||||||| ||||||||    
T  22787424 caggggcggatctagacatgtcatattagtgtggcaaaatttttaaagaaactataatacaa-ttatactaaaaataatatataacatt 22787511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 33403823 - 33403772
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||| ||||||    
T  33403823 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactat 33403772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 38741373 - 38741322
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||| ||||||    
T  38741373 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactat 38741322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 37188274 - 37188220
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||| ||||||| |||||||||||||||| ||| || ||||| ||||||    
T  37188274 caggggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactat 37188220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 10638031 - 10638092
Alignment:
Q  238 cggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattata 299  Q
    ||||| |||||||| |||||   |||| ||||||||| ||||||||||||||| ||||||||    
T  10638031 cggactcagacattcgatataaatgtgactaaaattttaaagaaactatgatgcaaattata 10638092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 11943666 - 11943719
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||||| | |||||||||||||| ||||||| ||| ||||||| |||||||    
T  11943666 aggggcggatctagacatttgatattagtgtggcaaaattttcaaacaaactat 11943719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 23347802 - 23347863
Alignment:
Q  260 gtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||||||||||||||| |||| || ||| ||| |||| |||| |||| |||||||||||    
T  23347802 gtgtggctaaaatttcaaataaacaataatgcaaactatattaaatataagaaataacattg 23347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 25586031 - 25586068
Alignment:
Q  245 agacatttgatattggtgtggctaaaatttcaaagaaa 282  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  25586031 agacttttgatattggtgtggctaaaatatcaaagaaa 25586068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 40154754 - 40154807
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  40154754 aggggcggacctagacttttgatattagtgtggctaaaatatcaaagaaactat 40154807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 396058 - 395994
Alignment:
Q  257 ttggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||| ||||||||| | | |||||||||||||  ||||||||||||||||||| |||||||||||    
T  396058 ttggagtggctaaattatgaaagaaactatgagctaaattatactaaaaataagaaataacattg 395994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 28210879 - 28210967
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    ||||||||||| | |||||||  ||||| ||||||| ||| ||| ||||||||||| ||   ||||||||||||||||||| ||||||||    
T  28210879 gcaggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataat-acaattatactaaaaataatatataacatt 28210967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 26557685 - 26557598
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    |||||||||| | |||||| | ||||| ||||||| ||| ||| ||||||||||| ||  || ||||||||||||||||| ||||||||    
T  26557685 caggggcggatctagacatgtcatattagtgtggcaaaatttttaaagaaactataatacaa-ttatactaaaaataatatataacatt 26557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 26903064 - 26903147
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataa 316  Q
    |||||||||| | |||||||  ||||| ||||||| ||| ||| ||||||||||| ||  |||||||||||||||||||| ||||    
T  26903064 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataat-aaaattatactaaaaataatatataa 26903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 36617976 - 36617893
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataa 316  Q
    |||||||||| | |||||||  ||||| ||||||| ||| ||| ||||||||||| ||  |||||||||||||||||||| ||||    
T  36617976 caggggcggatctagacattgcatattagtgtggcaaaatttttaaagaaactataat-aaaattatactaaaaataatatataa 36617893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 27237342 - 27237377
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggc 266  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27237342 gcaggggcggatccagacatttgatattggtgtggc 27237377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 50386225 - 50386174
Alignment:
Q  235 gggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||| ||||||    
T  50386225 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactat 50386174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 22418916 - 22418862
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||| ||||||| |||||||||||||||| ||| || ||||| ||||||    
T  22418916 caggggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactat 22418862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 2125807 - 2125719
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    ||||||||||| | |||||||  ||||| ||||||| ||  ||| ||||||||||| ||  || ||||||||||||||||| ||||||||    
T  2125807 gcaggggcggatctagacattgcatattagtgtggcaaattttttaaagaaactataatacaa-ttatactaaaaataatatataacatt 2125719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 423987 - 424074
Alignment:
Q  233 aggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacatt 320  Q
    ||||||||| | |||||||| ||||| ||||||| ||  ||| ||||||||||| ||   ||||||||||||||||||| ||||||||    
T  423987 aggggcggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacgaattatactaaaaataatatataacatt 424074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 34751233 - 34751176
Alignment:
Q  264 ggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||||||||||| || ||| |||||||| ||||||||| || ||||||||    
T  34751233 ggctaaaatttcaaagaaacaataatgcaaattatattaaaaataagaagtaacattg 34751176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 26327050 - 26326994
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactatg 287  Q
    |||| |||||| | ||||||||||||||||||| || ||| ||||||||||||||||    
T  26327050 gcagaggcggatctagacatttgatattggtgtagcaaaactttcaaagaaactatg 26326994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 34226069 - 34226013
Alignment:
Q  230 ggcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||| ||||||| | |||||||||||||||||||||| ||| |||||||| ||||||    
T  34226069 ggcatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactat 34226013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 18862839 - 18862784
Alignment:
Q  231 gcaggggcggacccagacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||| ||||||||||||| ||  ||||||||||||||||| |||||||| ||||||    
T  18862839 gcagcggcggacccagactttcaatattggtgtggctaaactttcaaagcaactat 18862784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 13475554 - 13475588
Alignment:
Q  232 caggggcggacccagacatttgatattggtgtggc 266  Q
    |||||||||| ||||||||||||||||||||||||    
T  13475554 caggggcggatccagacatttgatattggtgtggc 13475588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 33824891 - 33824833
Alignment:
Q  263 tggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    |||||||||||| |||||||| || ||| ||| |||| ||||||||| |||||||||||    
T  33824891 tggctaaaattttaaagaaacaataatgcaaaatatattaaaaataagaaataacattg 33824833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 3059348 - 3059307
Alignment:
Q  245 agacatttgatattggtgtggctaaaatttcaaagaaactat 286  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  3059348 agacatttgatattggtgtggcaaaactttcaaagtaactat 3059307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 5568958 - 5569019
Alignment:
Q  260 gtgtggctaaaatttcaaagaaactatgatgtaaattatactaaaaataataaataacattg 321  Q
    ||||||||||||||| |||||||  || ||| ||| |||| ||||||||| |||||||||||    
T  5568958 gtgtggctaaaatttaaaagaaaaaataatgcaaactatattaaaaataagaaataacattg 5569019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University