View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_high_11 (Length: 398)
Name: NF7943_high_11
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 22594363 - 22593992
Alignment:
| Q |
12 |
agagaaagcttttaattccaacatgtattgcccatgagttcagctgagcttacccactccaggtgtttgtttccttcttggcactcatgaagcatatgag |
111 |
Q |
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| T |
22594363 |
agagaaagcttttaattccaacatgtattgcccatgagttcagctgagcttacccactccaggtgtttgtttccttcttggcactcatgaagcatatgag |
22594264 |
T |
|
| Q |
112 |
tttctaagttttacatggtattaaaattagggtcatagacctcgtgaaaaaagaaggatccaaagatgcatatagcatgtttagtattttgttatcaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22594263 |
tttctaagttttacatggtattaaaattagggtcatagacctcgtgaaaaaagaagaatccaaagatgcatatagcatgtttagtattttgttataaatt |
22594164 |
T |
|
| Q |
212 |
taaattttatgatcattattgcaaaggcaagatatggttgaatccttccaccgtctaagattttgttcataattttgtgagcattcatgccaacacatgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22594163 |
taaattttatgatcattattgcaaaggcaagatatgggtgaatccttccaccgtctaagattttgttcataattttgtgagcattcatgccaa-acatgt |
22594065 |
T |
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| Q |
312 |
agtttttgttagacactcttgctatgtttttggtaaaatataatcttgctatttaatagtagaagtgtatatt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22594064 |
agtttttgttagacactcttgctatgtttttggtaaaatacaatcttgctatttaatagtagaagtgtatatt |
22593992 |
T |
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