View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7943_high_12 (Length: 397)

Name: NF7943_high_12
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7943_high_12
NF7943_high_12
[»] chr1 (3 HSPs)
chr1 (16-377)||(10042105-10042452)
chr1 (199-253)||(3523388-3523441)
chr1 (255-292)||(23902722-23902759)
[»] chr5 (7 HSPs)
chr5 (202-253)||(18542219-18542270)
chr5 (203-253)||(12976661-12976711)
chr5 (203-253)||(13049988-13050038)
chr5 (193-253)||(9895138-9895197)
chr5 (209-245)||(28735829-28735865)
chr5 (203-247)||(30271691-30271735)
chr5 (225-253)||(34261663-34261691)
[»] chr4 (7 HSPs)
chr4 (193-253)||(22402374-22402434)
chr4 (209-245)||(7422169-7422205)
chr4 (198-240)||(28373102-28373144)
chr4 (198-240)||(44768335-44768377)
chr4 (198-251)||(9018880-9018933)
chr4 (203-247)||(20742370-20742414)
chr4 (199-251)||(33904744-33904796)
[»] chr6 (6 HSPs)
chr6 (198-253)||(8013846-8013901)
chr6 (198-244)||(29236254-29236300)
chr6 (213-253)||(29236675-29236715)
chr6 (201-244)||(26493531-26493574)
chr6 (210-248)||(10338617-10338655)
chr6 (210-255)||(4070382-4070427)
[»] chr3 (4 HSPs)
chr3 (203-253)||(36895362-36895412)
chr3 (200-245)||(31702685-31702730)
chr3 (271-299)||(4216013-4216041)
chr3 (198-242)||(28887384-28887428)
[»] chr8 (5 HSPs)
chr8 (198-250)||(11556955-11557007)
chr8 (204-247)||(28131221-28131264)
chr8 (199-244)||(28478065-28478110)
chr8 (193-253)||(30629370-30629430)
chr8 (199-251)||(35956161-35956213)
[»] chr2 (2 HSPs)
chr2 (199-244)||(22556235-22556280)
chr2 (222-250)||(5047022-5047050)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 10042105 - 10042452
Alignment:
Q  16 ctttttataactcaagtgtcgcaccggatatataaagcactgacacaaacaccggacacactctgacacgttgatagatattactgattattagggaaaa 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10042105 ctttttataactcaagtgtcgcaccggatatacaaagcactgacacagacaccggacacactctgacacattgatagatattacttattattagggaaaa 10042204  T
Q  116 tggaagtaattgaatgtaactgcatttgtgtgttcgtgtccttgtgtcggacaatggacacatcttagacatgcgattgacgtgtagacaccagtaataa 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10042205 tggaagtaattgaatgtaactgcatttgtgttttcgtgtccttgtgtcggacaatggacacatcttagacatgcgactgacgtgtagacaccagtaataa 10042304  T
Q  216 tttgtgaaaatagaagtgattgaatgtaatcacatgtgctggacactgaacacaactttaatctgaagtgtcagtgctgcattgtggcccttgatattgc 315  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||              ||||||||||||||||||||    
T  10042305 tttgtgaaaatagaagtgattgaatgtaaccacatgtgctgaacactgaacacaactttaatctga--------------attgtggcccttgatattgc 10042390  T
Q  316 gaaaaatcacagtcaaatgcaggtgatgctacctgaatttgatgtagtctcaattgtggttg 377  Q
     ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  10042391 aaaaaatcacggtcaaatgcaagtgatgcaacctgaatttgatgtagtctcaattgtggttg 10042452  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 3523388 - 3523441
Alignment:
Q  199 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    |||||||||  ||||||||||  ||||||||||||||||||||||| ||||||||    
T  3523388 gtagacaccgataataatttgataaaatagaagtgattgaatgtaa-cacatgtg 3523441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 23902759 - 23902722
Alignment:
Q  255 tggacactgaacacaactttaatctgaagtgtcagtgc 292  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  23902759 tggacactgaacacatcttcaatctgaagtgtcagtgc 23902722  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 18542270 - 18542219
Alignment:
Q  202 gacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  18542270 gacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgtg 18542219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 12976711 - 12976661
Alignment:
Q  203 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    ||||||||||||||||  ||||||| |||| | ||||||||||||||||||    
T  12976711 acaccagtaataatttaagaaaataaaagtcaatgaatgtaatcacatgtg 12976661  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 13050038 - 13049988
Alignment:
Q  203 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    ||||||||||||||||  ||||||| |||| | ||||||||||||||||||    
T  13050038 acaccagtaataatttaagaaaataaaagtcaatgaatgtaatcacatgtg 13049988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 9895138 - 9895197
Alignment:
Q  193 tgacgtgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    |||||||| |||||||||||||||||| ||||||| || |  ||||| |||||||||||||    
T  9895138 tgacgtgtggacaccagtaataatttgagaaaata-aattatttgaacgtaatcacatgtg 9895197  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 28735865 - 28735829
Alignment:
Q  209 gtaataatttgtgaaaatagaagtgattgaatgtaat 245  Q
    ||||||||||  |||||||||||||||||||||||||    
T  28735865 gtaataatttaagaaaatagaagtgattgaatgtaat 28735829  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 30271691 - 30271735
Alignment:
Q  203 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatca 247  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||||    
T  30271691 acaccagtaatgatttaagaatatagaagtgattgaatgtaatca 30271735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 34261691 - 34261663
Alignment:
Q  225 atagaagtgattgaatgtaatcacatgtg 253  Q
    |||||||||||||||||||||||||||||    
T  34261691 atagaagtgattgaatgtaatcacatgtg 34261663  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 22402374 - 22402434
Alignment:
Q  193 tgacgtgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    |||| |||||| ||| ||||||| ||| |||||||||||||||||||||||| ||||||||    
T  22402374 tgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtg 22402434  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 7422169 - 7422205
Alignment:
Q  209 gtaataatttgtgaaaatagaagtgattgaatgtaat 245  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7422169 gtaataatttgagaaaatagaagtgattgaatgtaat 7422205  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 28373102 - 28373144
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaat 240  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  28373102 tgtagacaccaataatactttgagaaaatagaagtgattgaat 28373144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 44768377 - 44768335
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaat 240  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  44768377 tgtagacaccaataatactttgagaaaatagaagtgattgaat 44768335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 9018933 - 9018880
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatg 251  Q
    |||||||||||||| ||||||| ||||||  |||| ||||||||||| ||||||    
T  9018933 tgtagacaccagtagtaatttgagaaaatgaaagtaattgaatgtaaccacatg 9018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 20742370 - 20742414
Alignment:
Q  203 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatca 247  Q
    ||||||||||||||||| ||||||  |||| ||||||||||||||    
T  20742370 acaccagtaataatttgagaaaatgcaagtaattgaatgtaatca 20742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 33904796 - 33904744
Alignment:
Q  199 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatg 251  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||| | ||||||    
T  33904796 gtagacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatg 33904744  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 8013901 - 8013846
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    ||||||||| ||||||||||||  |||||| |||||||||||||||| ||||||||    
T  8013901 tgtagacactagtaataatttgaaaaaatataagtgattgaatgtaaccacatgtg 8013846  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 29236254 - 29236300
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 244  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||    
T  29236254 tgtagacactaataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 29236675 - 29236715
Alignment:
Q  213 taatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  29236675 taatttgagaaaatagaagtgattgaatgtaatcacttgtg 29236715  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 26493574 - 26493531
Alignment:
Q  201 agacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 244  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||    
T  26493574 agacactagtaacaatttgagaaaatagaagtgattgaatgtaa 26493531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 10338617 - 10338655
Alignment:
Q  210 taataatttgtgaaaatagaagtgattgaatgtaatcac 248  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  10338617 taataatttaagaaaatagaagtgattgaatgtaatcac 10338655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 4070382 - 4070427
Alignment:
Q  210 taataatttgtgaaaatagaagtgattgaatgtaatcacatgtgct 255  Q
    |||||||||| ||||  ||||||||||||||||||| |||||||||    
T  4070382 taataatttgagaaataagaagtgattgaatgtaattacatgtgct 4070427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 36895362 - 36895412
Alignment:
Q  203 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    ||||| |||||||||||  |||||| |||||||||||||||||||||||||    
T  36895362 acacctgtaataatttgataaaatataagtgattgaatgtaatcacatgtg 36895412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 31702685 - 31702730
Alignment:
Q  200 tagacaccagtaataatttgtgaaaatagaagtgattgaatgtaat 245  Q
    ||||||||| |||||||||  |||||||| ||||||||||||||||    
T  31702685 tagacaccaataataatttaagaaaatagtagtgattgaatgtaat 31702730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Complemental strand, 4216041 - 4216013
Alignment:
Q  271 ctttaatctgaagtgtcagtgctgcattg 299  Q
    |||||||||||||||||||||||||||||    
T  4216041 ctttaatctgaagtgtcagtgctgcattg 4216013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 28887384 - 28887428
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgt 242  Q
    ||||||||||| |||||||||  |||||||||| |||||||||||    
T  28887384 tgtagacaccaataataatttaagaaaatagaattgattgaatgt 28887428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 11557007 - 11556955
Alignment:
Q  198 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacat 250  Q
    |||||||||| ||||||||||| ||||||  |||||||||||||||| |||||    
T  11557007 tgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 28131264 - 28131221
Alignment:
Q  204 caccagtaataatttgtgaaaatagaagtgattgaatgtaatca 247  Q
    ||||||||||||| || ||||||||||||||||| |||||||||    
T  28131264 caccagtaataatgtgagaaaatagaagtgattgtatgtaatca 28131221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 28478110 - 28478065
Alignment:
Q  199 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 244  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||    
T  28478110 gtagacacccgtaataatttaaaaaaatagaagtgattgaatgtaa 28478065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 30629370 - 30629430
Alignment:
Q  193 tgacgtgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 253  Q
    |||| |||||||||| |||||| ||| | |||||  |||||||||||||||| ||||||||    
T  30629370 tgacatgtagacaccggtaatactttataaaaatgaaagtgattgaatgtaaacacatgtg 30629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 35956213 - 35956161
Alignment:
Q  199 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatg 251  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||| | ||||||    
T  35956213 gtagacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatg 35956161  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 22556235 - 22556280
Alignment:
Q  199 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 244  Q
    ||||||||  ||||||||||  ||||||||||||||||||||||||    
T  22556235 gtagacacaggtaataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 5047050 - 5047022
Alignment:
Q  222 aaaatagaagtgattgaatgtaatcacat 250  Q
    |||||||||||||||||||||||||||||    
T  5047050 aaaatagaagtgattgaatgtaatcacat 5047022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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