View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_high_13 (Length: 379)
Name: NF7943_high_13
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_high_13 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 8345845 - 8346195
Alignment:
| Q |
10 |
attattcttaacaaaataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtacgtttgtctatcttatattatcaaaaattt |
109 |
Q |
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| T |
8345845 |
attattcttaacaaaataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtatgtttgtctagcttatattatcaaaaattt |
8345944 |
T |
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| Q |
110 |
agaacacatcgcgacttctcagttatcactattctaccattttcgtacatgtttcatcaatagaaaatcatacattaaactgatatggctactaggcaag |
209 |
Q |
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| T |
8345945 |
agaacacattgcgacttctcagttatcactattctaccattttcgttcatgtttcatcaatagaaaatcatacattaaactgatatggctactaggcaag |
8346044 |
T |
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| Q |
210 |
aatgaataaaataacttaggaagttaatggattagcacagttttcgtattaaaaccttggtatctatatcccttaataccactgttgacttagtgtataa |
309 |
Q |
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| T |
8346045 |
aatgaataaa--aacttaggaagttgatggtttagcacagttttcgtattaaaacattggtatctatatcccttaataccact-ttgatttagtgtataa |
8346141 |
T |
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| Q |
310 |
gagaattttatattagagataaatacgttctttcatgtaaattgaaattaatac |
363 |
Q |
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| T |
8346142 |
gagaattttatataagagataaatatgttctttcatgtaaattgaaattaatac |
8346195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 96 - 363
Target Start/End: Original strand, 8329460 - 8329727
Alignment:
| Q |
96 |
attatcaaaaatttagaacacatcgcgacttctcagttatcactattctaccattttcgtacatgtttcatcaatagaaaatcatacattaaactgatat |
195 |
Q |
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| T |
8329460 |
attatcaaaaatttagaacacatcgcgacttctcagttatcactattctaccattttcatacatgtttcatcaatagaaaatcatacattaaactaatat |
8329559 |
T |
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| Q |
196 |
ggctactaggcaagaatgaataaaataacttaggaagttaatggattagcacagttttcgtattaaaaccttggtatctatatcccttaataccactgtt |
295 |
Q |
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| T |
8329560 |
ggctactaggcaagaatgaataaaataacttaggaagttaatggtttagcacaattttcgtattaaaacattggtatctatatcccttaataccactgtt |
8329659 |
T |
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| Q |
296 |
gacttagtgtataagagaattttatattagagataaatacgttctttcatgtaaattgaaattaatac |
363 |
Q |
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| T |
8329660 |
gacttagtgtataagagaattttatataagagataaatatgttctttcatgtaaattgaaattaatac |
8329727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 94 - 361
Target Start/End: Original strand, 8343251 - 8343529
Alignment:
| Q |
94 |
atattatcaaaaatttagaacacatcgcgacttctcagttatcact-----------attctaccattttcgtacatgtttcatcaatagaaaatcatac |
182 |
Q |
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| T |
8343251 |
atattatcaaaaatttagaacacatcgcgacttctcagctatcactctctgtggagtattctaccattttcatacatgtttcataaatcgaaaatcatac |
8343350 |
T |
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| Q |
183 |
attaaactgatatggctactaggcaagaatgaataaaataacttaggaagttaatggattagcacagttttcgtattaaaaccttggtatctatatccct |
282 |
Q |
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| T |
8343351 |
attaaactgatatggctactaggcaagaatgaataaaataacttaggaagttaatggtttagcacagttttcgtattaaaacattggtatctatatccct |
8343450 |
T |
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| Q |
283 |
taataccactgttgacttagtgtataagagaattttatattagagataaatacgttctttcatgtaaattgaaattaat |
361 |
Q |
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| T |
8343451 |
taataccactgttgacttagtgtataagagaattttatataagagataaacatgttctttcatgtaaatagaaattaat |
8343529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 8339137 - 8339210
Alignment:
| Q |
10 |
attattcttaacaaaataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtacgtt |
83 |
Q |
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| T |
8339137 |
attatttttaacaaaataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtacgtt |
8339210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 8480418 - 8480365
Alignment:
| Q |
12 |
tattcttaacaaaataaaagcagcttatatagccaatgcaaatcatcactaatg |
65 |
Q |
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| T |
8480418 |
tattcataacaaaataaaagcagcttatataagcaaagaaaatcatcactaatg |
8480365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9447 - 9491
Alignment:
| Q |
18 |
taacaaaataaaagcagcttatatagccaatgcaaatcatcacta |
62 |
Q |
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| T |
9447 |
taacaaaataaaagcagcttatataaccaaagaaaatcatcacta |
9491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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