View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7943_high_16 (Length: 327)
Name: NF7943_high_16
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 23002924 - 23003237
Alignment:
| Q |
1 |
ggcgatcgggaagacaccaggagtcatccacaagcggaatatctagtaaacaattcaagcactgagggaaaaatggggcgtgagacgacgtggaagaagg |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23002924 |
ggcgatcgggaagaccccaggagccatccacaagttgattatctagtaaccaattcaagcactgagggaaaaatggggcgtgaggcgacgtggaagaagg |
23003023 |
T |
|
| Q |
101 |
aatcattgccacccatgctgtatcatatgaagaaattgaaagttcaaccttgttgaaaatgctcttgattctttctttagtgtcttcaaaacactaaaag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23003024 |
aatcatggccacccatgctgtatcatatgaggaaattgaaagttcaaccttcttgaaaatgttcttgattctttctttagtgtcttcaaaacactaaaag |
23003123 |
T |
|
| Q |
201 |
cgataaaacacattaatttgatttccttactactgctcacnnnnnnnngtctttgtatttaataaataacttaaaatatacgcatgtcataccaaagctg |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23003124 |
caataaaacacattaatttgatttccttactactgctcacaaaaaaaagtctttgtatttaataaataacttaaaatatacgcatgtcataccaaagctg |
23003223 |
T |
|
| Q |
301 |
tagtactgttattc |
314 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
23003224 |
tagtgctgttattc |
23003237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 27234063 - 27233853
Alignment:
| Q |
4 |
gatcgggaagacaccaggagtcatccacaagcggaatatctagtaaacaattcaagcactgagggaaaaatggggcgtgagacgacgtggaagaaggaat |
103 |
Q |
| |
|
|||||||||||| ||||||| |||| || || || |||| ||||| ||||||||||||||||| ||||| || || |||| |||||| ||||||||||| |
|
|
| T |
27234063 |
gatcgggaagaccccaggagccatcgacgagttgattatccagtaaccaattcaagcactgaggaaaaaacggcgcatgaggcgacgttgaagaaggaat |
27233964 |
T |
|
| Q |
104 |
cattgccacccatgctgtatcatatgaagaaattgaaagttcaaccttgttgaaaatgctcttgattctttctttagtgtcttcaaaacactaaaagcga |
203 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||| | |
|
|
| T |
27233963 |
cattgccacaaaagctgtatcatatgaagaaattgaaagttcaaccttgttgaacatgttcttgattctttcattagtgtcttcaaaacactacaagcaa |
27233864 |
T |
|
| Q |
204 |
taaaacacatt |
214 |
Q |
| |
|
||| ||||||| |
|
|
| T |
27233863 |
taacacacatt |
27233853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University