View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7943_high_3 (Length: 719)

Name: NF7943_high_3
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7943_high_3
NF7943_high_3
[»] chr6 (8 HSPs)
chr6 (18-643)||(4387938-4388563)
chr6 (501-643)||(4375746-4375890)
chr6 (478-617)||(4383341-4383476)
chr6 (447-571)||(4368505-4368629)
chr6 (447-571)||(4364116-4364239)
chr6 (242-279)||(32839571-32839608)
chr6 (231-279)||(18367918-18367966)
chr6 (230-279)||(17327590-17327639)
[»] chr8 (9 HSPs)
chr8 (561-643)||(3596281-3596363)
chr8 (185-285)||(13436904-13437003)
chr8 (230-279)||(34450961-34451010)
chr8 (231-279)||(18964261-18964309)
chr8 (242-280)||(25566912-25566950)
chr8 (230-280)||(26902103-26902153)
chr8 (242-279)||(15816058-15816095)
chr8 (242-279)||(39820510-39820547)
chr8 (229-278)||(43737752-43737801)
[»] chr7 (7 HSPs)
chr7 (233-279)||(18212973-18213019)
chr7 (243-282)||(21880235-21880274)
chr7 (193-278)||(11272531-11272617)
chr7 (242-280)||(23751981-23752019)
chr7 (183-233)||(32308138-32308188)
chr7 (242-279)||(598290-598327)
chr7 (242-279)||(29812598-29812635)
[»] chr2 (7 HSPs)
chr2 (231-280)||(34784910-34784959)
chr2 (230-282)||(24009365-24009417)
chr2 (185-274)||(23058389-23058481)
chr2 (230-279)||(20242667-20242716)
chr2 (230-279)||(41843516-41843565)
chr2 (244-279)||(18420363-18420398)
chr2 (185-279)||(18631351-18631445)
[»] chr1 (9 HSPs)
chr1 (183-279)||(7918154-7918252)
chr1 (183-234)||(25361904-25361955)
chr1 (230-278)||(10577676-10577724)
chr1 (230-278)||(12919015-12919063)
chr1 (183-234)||(44482248-44482299)
chr1 (242-279)||(18556385-18556422)
chr1 (230-279)||(25934697-25934746)
chr1 (230-279)||(32461393-32461442)
chr1 (230-279)||(41597410-41597459)
[»] scaffold0227 (1 HSPs)
scaffold0227 (234-280)||(15045-15091)
[»] chr3 (5 HSPs)
chr3 (230-279)||(35223008-35223057)
chr3 (228-279)||(13414521-13414572)
chr3 (230-279)||(13845465-13845514)
chr3 (231-280)||(20503536-20503585)
chr3 (242-279)||(41961579-41961616)
[»] chr5 (4 HSPs)
chr5 (183-279)||(19429450-19429546)
chr5 (242-279)||(6247692-6247729)
chr5 (230-279)||(21576685-21576734)
chr5 (242-279)||(43564963-43565000)
[»] scaffold0168 (1 HSPs)
scaffold0168 (244-279)||(21372-21407)
[»] scaffold0003 (1 HSPs)
scaffold0003 (242-280)||(241687-241725)
[»] chr4 (1 HSPs)
chr4 (185-238)||(22234876-22234929)


Alignment Details
Target: chr6 (Bit Score: 569; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Original strand, 4387938 - 4388563
Alignment:
Q  18 gtactgagagatattgactacctaaaattgattgaaagacacggaacaagatcctctagctgaaagactaaataaaaagtatattggttaaagaattgaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4387938 gtactgagagatattgactacctaaaattgattgaaagacacagaacaagatcctctagctgaaagactaaataaaaagtatattggttaaagaattgaa 4388037  T
Q  118 ttaaaagtttaatctatgaagcatggacgccggacaacacacgaacaccgacagccaannnnnnnagaaaatcacataatccagggtaattatatgtctc 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||       |||||||||||||||||||||||||||||||| ||    
T  4388038 ttaaaagtttaatctatgaagcatggacgccggacaagacacgaacaccaacagccaatttttttagaaaatcacataatccagggtaattatatgtgtc 4388137  T
Q  218 agtgtcgtggcggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatagagtttaatacacaatgagcaggagtacataaaattgaa 317  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4388138 agtgtcgtggcggtgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcatagagtttaatacacaatgagcaggagtacataaaattgaa 4388237  T
Q  318 ccaaatatatacaaggatagcaagatcctactttaattctttaaacatagattaagatggtagtcaaagtaaagattttagcaaggatagcaagatccta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4388238 ccaaatatatacaaggatagcaagatcctactttaattctttaaacacagattaagatggtagtcaaagtaaagattttagcaaggatagcaagatccta 4388337  T
Q  418 caaagttcataataaccatatagtaaaagaacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacaca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4388338 caaagttcataataaccatatagtaaaagaacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacaca 4388437  T
Q  518 attcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaagacataaacatcgataacagtcaaagtctaggtatttaatc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  4388438 attcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaagatataaacatcgataacagtcaaattctaggtatttaatc 4388537  T
Q  618 tagaaaatctttcaaatttaatcaga 643  Q
    ||||||||||||||||||||||||||    
T  4388538 tagaaaatctttcaaatttaatcaga 4388563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 501 - 643
Target Start/End: Original strand, 4375746 - 4375890
Alignment:
Q  501 taagaaagccaaacacaattcataagtcacaaattcataccttaagctata--gtattaagcttttaacaagtaccaagacataaacatcgataacagtc 598  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  4375746 taagaaagccaaacacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtc 4375845  T
Q  599 aaagtctaggtatttaatctagaaaatctttcaaatttaatcaga 643  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    
T  4375846 aaattctaggtatttaatctagaaaatctttcaaatttaatcaga 4375890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 478 - 617
Target Start/End: Original strand, 4383341 - 4383476
Alignment:
Q  478 cattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaag 577  Q
    ||||||||| || | |||||||||||||||||||||||||||||| |||||||||||| | |||||||||   |||||||||  ||||||||||||||||    
T  4383341 cattaaactcaagtgaaaacccataagaaagccaaacacaattcacaagtcacaaattaaaaccttaagc--aagtattaaggatttaacaagtaccaag 4383438  T
Q  578 acataaacatcgataacagtcaaagtctaggtatttaatc 617  Q
      |||||||||||||| ||||||| |||||||||||||||    
T  4383439 --ataaacatcgataatagtcaaattctaggtatttaatc 4383476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 447 - 571
Target Start/End: Original strand, 4368505 - 4368629
Alignment:
Q  447 aacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaag 546  Q
    |||||| |||||||||||||| ||| ||   || ||||||||| |||||| ||||| ||||| || |||||| | |||||||||||||| | | ||||||    
T  4368505 aacatatataagaaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaag 4368604  T
Q  547 ctatagtattaagcttttaacaagt 571  Q
    ||||| |||||||||||| ||||||    
T  4368605 ctataatattaagcttttcacaagt 4368629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 571
Target Start/End: Original strand, 4364116 - 4364239
Alignment:
Q  447 aacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaag 546  Q
    |||||| |||||||||| ||||||| ||   || || |||||| ||||| |||||| | ||  || |||||||||||||||||||||||   | ||||||    
T  4364116 aacataaataagaaaattactacagacagtacactacacttaattcaaa-cccataggtaattcatacacaattcataagtcacaaattacaaacttaag 4364214  T
Q  547 ctatagtattaagcttttaacaagt 571  Q
    ||  |||||||||||||||||||||    
T  4364215 cttgagtattaagcttttaacaagt 4364239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 32839608 - 32839571
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  32839608 gggacacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 18367918 - 18367966
Alignment:
Q  231 tgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    |||||||| |||||||||||||||||| || |||||| |||||||||||    
T  18367918 tgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 18367966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 17327639 - 17327590
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| | ||||||||||| ||||||| |||||| |||||||||||    
T  17327639 gtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 561 - 643
Target Start/End: Complemental strand, 3596363 - 3596281
Alignment:
Q  561 ttttaacaagtaccaagacataaacatcgataacagtcaaagtctaggtatttaatctagaaaatctttcaaatttaatcaga 643  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  3596363 ttttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaatcaga 3596281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 13437003 - 13436904
Alignment:
Q  185 aaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatagagttt 284  Q
    ||||||||||||| || |||||| | | || || |||||||| ||||||| ||| | ||||||||||| |||| || ||||||||||||||||||| |||    
T  13437003 aaaatcacataattcatggtaataacaagtgtcggtgtcgtgtcggtgtc-gacaccgggacacgcctaatccaaggagtgtctgtgcttcatagatttt 13436905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 34451010 - 34450961
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| |||||||||||||||||| || |||||| |||||||||||    
T  34451010 gtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 34450961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 18964261 - 18964309
Alignment:
Q  231 tgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||| || ||| ||||||||||||||||| ||||||||||||||||||    
T  18964261 tgtctaacacggagacacgccttatccgaggagtgtctgtgcttcatag 18964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 25566912 - 25566950
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  25566912 gggacacgcctaatccgaggagtgtctgtgcttcataga 25566950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 26902153 - 26902103
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    ||||||| | ||||||||||||||||| ||| |||||| ||||||||||||    
T  26902153 gtgtctggcacggggacacgccttatctgaggagtgtccgtgcttcataga 26902103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 15816095 - 15816058
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  15816095 gggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 39820510 - 39820547
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  39820510 gggacacgcctaatccgagaagtgtccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 43737801 - 43737752
Alignment:
Q  229 ggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcata 278  Q
    |||||||||| |||||| ||||||||||| || |||||| ||||||||||    
T  43737801 ggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 18213019 - 18212973
Alignment:
Q  233 tctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  18213019 tctgacacggggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 21880235 - 21880274
Alignment:
Q  243 ggacacgccttatccgagaagtgtctgtgcttcatagagt 282  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  21880235 ggacacgcctaatccgagaagtgtccgtgcttcatagagt 21880274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 11272617 - 11272531
Alignment:
Q  193 ataatccagggtaattatatgtctcagtgtcgtggcggtgtctgactcg-gggacacgccttatccgagaagtgtctgtgcttcata 278  Q
    ||||| ||| ||||||| | || || |||||||| ||||||| ||| || ||||||||||| ||||||| ||| |||||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgcgggacacgcctaatccgaggagtatctgtgcttcata 11272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 23751981 - 23752019
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  23751981 gggacacgcctaatccgataagtgtctgtgcttcataga 23752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 32308138 - 32308188
Alignment:
Q  183 agaaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgt 233  Q
    ||||||||||||||| ||| |||||| ||||| ||||||||||| ||||||    
T  32308138 agaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 598290 - 598327
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  598290 gggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 29812635 - 29812598
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  29812635 gggacacgcctaatccgagaagtgtccgtgcttcatag 29812598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 34784959 - 34784910
Alignment:
Q  231 tgtctgactcggggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  34784959 tgtctgacacggggacacgccttattcgaggagtgtctgtgcttcataga 34784910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 24009365 - 24009417
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatagagt 282  Q
    ||||||||| |||||||||||||||||| || |||||| ||||||||||||||    
T  24009365 gtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatagagt 24009417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 274
Target Start/End: Complemental strand, 23058481 - 23058389
Alignment:
Q  185 aaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgt---ctgactcggggacacgccttatccgagaagtgtctgtgctt 274  Q
    ||||||||||||||||| ||||||| | || || |||||||| ||||||   | ||| | ||||||||||| |||||||||||||| ||||||    
T  23058481 aaaatcacataatccagtgtaattacaagtgtcggtgtcgtgtcggtgttgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 23058389  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 20242716 - 20242667
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| || |||||||||||||||||  ||||||||||||||||||    
T  20242716 gtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcatag 20242667  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 41843516 - 41843565
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||| ||| ||||||||||| ||||||||| ||||||||||||||||||    
T  41843516 gtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcatag 41843565  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 18420398 - 18420363
Alignment:
Q  244 gacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18420398 gacacgcctaatccgagaagtgtctgtgcttcatag 18420363  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 18631445 - 18631351
Alignment:
Q  185 aaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    |||||||||| || ||  |||||||||||| ||||| ||||  ||||||| ||| | ||||||||||| || |||| |||||| | |||||||||    
T  18631445 aaaatcacatcattcaatgtaattatatgtatcagtatcgtatcggtgtcagacactgggacacgcctaatgcgaggagtgtccgagcttcatag 18631351  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 7918252 - 7918154
Alignment:
Q  183 agaaaatcacataatccagggtaattatatgtctcagtgtcgtggc--ggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||| |   || |||||| |  |||||| ||| ||||||| |||||| |||||||||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcaacgtttctgacaccaggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 25361904 - 25361955
Alignment:
Q  183 agaaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgtc 234  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||| |||||||    
T  25361904 agaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 10577724 - 10577676
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcata 278  Q
    ||||||||| |||||||||||||||||| || |||||| ||||||||||    
T  10577724 gtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 10577676  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 12919015 - 12919063
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcata 278  Q
    ||||||||| |||||||||| ||||||||||||||||  ||||||||||    
T  12919015 gtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 44482248 - 44482299
Alignment:
Q  183 agaaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgtc 234  Q
    ||||||||||||||| ||| |||||||||||| || |||||||| |||||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 44482299  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 18556422 - 18556385
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18556422 gggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 25934697 - 25934746
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| |||||| ||||||||||| || |||||| |||||||||||    
T  25934697 gtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatag 25934746  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 32461442 - 32461393
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| | ||||||||||| |||| ||||||||| |||||||||||    
T  32461442 gtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 41597459 - 41597410
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| |||||| |||| |||||| || ||||||||||||||||||    
T  41597459 gtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcatag 41597410  T

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Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 15045 - 15091
Alignment:
Q  234 ctgactcggggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  15045 ctgacacggggacacgccttatccgaggagtgtttgtgcttcataga 15091  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 35223008 - 35223057
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| ||||||||||| ||||||||| |||||| |||||||||||    
T  35223008 gtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatag 35223057  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 13414521 - 13414572
Alignment:
Q  228 cggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||| ||| | ||||||||||||||||||||||||||| | ||||||||    
T  13414521 cggtgtcggacacagggacacgccttatccgagaagtgtctatacttcatag 13414572  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 13845514 - 13845465
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| ||| |||||||||||||| || |||||| |||||||||||    
T  13845514 gtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 20503536 - 20503585
Alignment:
Q  231 tgtctgactcggggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    |||||||| | ||||||||||| ||||||| |||||| ||||||||||||    
T  20503536 tgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcataga 20503585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 41961616 - 41961579
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  41961616 gggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 279
Target Start/End: Original strand, 19429450 - 19429546
Alignment:
Q  183 agaaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||||||   || |||| ||| ||| ||  ||||||| ||||||||||| | ||| |||| || |||| |||||||||||||||||||||    
T  19429450 agaaaatcacataacttagtgtaaatatctgtgtcgctgtcgtgtcggtgtctgacaccgggtcacgtctaatccaagaagtgtctgtgcttcatag 19429546  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 6247692 - 6247729
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  6247692 gggacacacctaatccgagaagtgtctgtgcttcatag 6247729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 21576734 - 21576685
Alignment:
Q  230 gtgtctgactcggggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| | ||||||||||| ||||||| |||||| |||||||||||    
T  21576734 gtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 43564963 - 43565000
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  43564963 gggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 21372 - 21407
Alignment:
Q  244 gacacgccttatccgagaagtgtctgtgcttcatag 279  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21372 gacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 241687 - 241725
Alignment:
Q  242 gggacacgccttatccgagaagtgtctgtgcttcataga 280  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  241687 gggacacgcctaatccgagaagtgtccgtgcttcataga 241725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 22234929 - 22234876
Alignment:
Q  185 aaaatcacataatccagggtaattatatgtctcagtgtcgtggcggtgtctgac 238  Q
    ||||||||||||| ||| |||||| ||||| || |||||||| |||||||||||    
T  22234929 aaaatcacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgac 22234876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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