View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_high_5 (Length: 542)
Name: NF7943_high_5
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 527
Target Start/End: Original strand, 36345155 - 36345677
Alignment:
| Q |
10 |
gatggaagacaagggagtgaaatgcagccctatgttgaagcaccgcctaatgcgtcagaacaaaatcgttattcacatcgatcaattgagacattgatag |
109 |
Q |
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| T |
36345155 |
gatggaagacaagggagtgaaatgcagccctatgttgaagcaccgcctaatgcggcagaacaaaatcgttattcacatcgatcaattgagacattgatag |
36345254 |
T |
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| Q |
110 |
tggtgatagcagtgatcactatagtaggtgtgattgcaggaatgattgcaaggttgtgtggtggaagacactttggaggaaatggtgagaatgatataga |
209 |
Q |
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| T |
36345255 |
tggtgatagcagtgatcactatagtaggtgtgattgctggaatgattgcaaggttgtgtggtggaagacactttggaggaaatggtgagaatgatataga |
36345354 |
T |
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| Q |
210 |
aggttgggttgaaaggaagtgtagaagttgcattgatgcaggtcttccaccaccgccgccgccagctgaacctaaacccgaagagccaaaggcagaacca |
309 |
Q |
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| T |
36345355 |
aggttgggttgaaaggaagtgtagaagttgcattgatgcaggtcttccaccaccaccgccgccagctgaacctaaacccgaagagccaaaggcagaacca |
36345454 |
T |
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| Q |
310 |
aaggcagaagctgcagcaggaggtggtgatggaagtaaatgaaaaaggtatcagaataaagaa-----tatgacgcttcaaattgaaggcgtgtctggtg |
404 |
Q |
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| T |
36345455 |
aaggcagaagctgcagcaggaggtggtgatggaagtaaatgaaaaaggtatcagaatgaagaacctactatgacgcttcaaattgaaggcgtgttcggtg |
36345554 |
T |
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| Q |
405 |
tttgacaaagacacatatgattatggttacatttaatttatctacattcttaaattattacaggtgtcaacgttaagtgacgtgtccgatgtatgtttct |
504 |
Q |
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| T |
36345555 |
tttgacaaagacacatatggttatggttacatttaatttatctacattcttaaattattacaggtgtcaacattaagtgacgtgtccgatgtatgtttct |
36345654 |
T |
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| Q |
505 |
gggttattattccatattagatg |
527 |
Q |
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| T |
36345655 |
gggttattattccatattagatg |
36345677 |
T |
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