View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7943_high_6 (Length: 535)
Name: NF7943_high_6
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_high_6 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 167 - 485
Target Start/End: Original strand, 7729166 - 7729484
Alignment:
| Q |
167 |
gaaggatggctcttggagattttgcacggattacagggctttgaacaccatcactatcaaagacagttctcctataccaatagtggatgaaatcttagat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
7729166 |
gaaggatggctcttggagattttgcacggattacagggctttgaacaccatcactatcaaagacagttttcctattccaattgtggatgaaatcttagat |
7729265 |
T |
|
| Q |
267 |
gaattgcttggtgcataatatttttctaaacttgaattaaggtctggctaccaccacattctagtcacacctgaggatagacacaagacttcctttcgaa |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7729266 |
gaattgcttggtgcataatatttttctaaacttgaattaaggtctggctaccaccacattctagtcacacctgaggatagacacaagacttcctttcgaa |
7729365 |
T |
|
| Q |
367 |
cacatcaaggcctttatgagtggttggtcaaaccctttgggttatgtaatgcccttacttcctttcaaagtttgatgaaccacgtttttcaggcacaact |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7729366 |
cacatcaaggcctttatgagtggttggtcaaaccctttgggttatctaaggcccctgcttcctttcaaagtttgatgaaccacgtttttctggcacaact |
7729465 |
T |
|
| Q |
467 |
tcgcaaatcagtattggtg |
485 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7729466 |
tcgcaaatcagtattggtg |
7729484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7729000 - 7729083
Alignment:
| Q |
1 |
ggtggtcactggtggtttagggcggcagatatgatggttggtgtacaaagtgagaatcactaccacaaagatttctaaactcgg |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7729000 |
ggtggtcactggtggtttagggcggcagatatgatggttggtgaacaaagtgagaatcaccaccacaaagatttctaaactcgg |
7729083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 42679 - 42809
Alignment:
| Q |
171 |
gatggctcttggagattttgcacggattacagggctttgaacaccatcactatcaaagacagttctcctataccaatagtggatgaaatcttagatgaat |
270 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||||| |||||| | |||||| ||||||| |||| ||| || || | |||||||||| | || |||||| |
|
|
| T |
42679 |
gatgggtcttggaggttttgtactgattacagggcattgaactctatcactgtcaaagatagttttcccattcctacagtggatgaactattggatgaac |
42778 |
T |
|
| Q |
271 |
tgcttggtgcataatatttttctaaacttga |
301 |
Q |
| |
|
| | |||||| | ||||||||||| ||||| |
|
|
| T |
42779 |
tacatggtgcttgctatttttctaagcttga |
42809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University