View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7943_high_8 (Length: 495)
Name: NF7943_high_8
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 480
Target Start/End: Original strand, 37969085 - 37969549
Alignment:
| Q |
16 |
ccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatcaagtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatcgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969085 |
ccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatcaagtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatcgc |
37969184 |
T |
|
| Q |
116 |
aatactaccaaggataagnnnnnnnnnnnncaacgtggttgttgttgccctcgattcttgctcaccattgttttaatccttgttacaatcgttgccgttg |
215 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37969185 |
aatactaccaatgataagaaaaagaaaaaacaacgtggttgttgttgccctcgattcttgctcaccattgttttaatccttgttacaatcgttgctgttg |
37969284 |
T |
|
| Q |
216 |
ttggaataacattagccacattgttctttgttttcaacccagagggacccacatttactattacccgctttgaggtaaaaaacgtcactaggccaccaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37969285 |
ttggaataacattagccacattgttctttgttttcaacccagagggacccacatttactattacccgctttgaggtaaaaaacgttactaggccaccaca |
37969384 |
T |
|
| Q |
316 |
ttatgaaatttatttgaaggctaagaatccaaataaaaggttgggaatcgtttacgtaaattctgaggcttctatgcttttcgacgatactgtggtttct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37969385 |
ttatgaaatttatttgaaggctaagaatccaaataaaaggttgggaatcgtttacgtaaattctgaggcttctatgcttttcgacgatactgtggttgct |
37969484 |
T |
|
| Q |
416 |
aaggggaaatttacaaagttgatggaacatggtgtagatgcttcgacacaatttaaggttgttgt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37969485 |
aaggggaaatttacaaagttgatggaacaaagtgtagatgcttcgacacaatttaaggttgttgt |
37969549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University