View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_10 (Length: 515)
Name: NF7943_low_10
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 25 - 498
Target Start/End: Original strand, 52074500 - 52074960
Alignment:
| Q |
25 |
gggagggaggggtgcgataaaaatagacacgtggcacacacctaagggtgtgaaattaagcgcataaacgaatgaatgaataaaataacggaaaacagac |
124 |
Q |
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| T |
52074500 |
gggagggaggggtgtgataaaaatagacacgtggcacacacctaagggtgtgaaattaagcgcataaacgaatgaatgaataaaataacggaaaacagac |
52074599 |
T |
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| Q |
125 |
aaagacaaagagcagatagagaaaaataaattaaaaggtggatggatcgatcgattcgagagaataataaaagaagcttcgctcagtttgttttgcttta |
224 |
Q |
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| T |
52074600 |
aaagacaaagagcagatagagaaaaataaat------------ggatcgatcgattcgagagaataataaaagaagcttcgctcagtttgttttgcttta |
52074687 |
T |
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| Q |
225 |
ttttcttctctttcattcacttttcgttatataaccaaaatataaggaaattaaaagacagacagatatcaatttcttttggtagatagacagattaatt |
324 |
Q |
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| T |
52074688 |
ttttcttctctttcattcacttttcgttatataacc-aaatataaggaaattaaaagacagacagatatcaatttcttttggtagatagacagattaa-t |
52074785 |
T |
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| Q |
325 |
tttaaatttcaaattcttcaatattatt-nnnnnnnnnngaatactaattaacatatgaatttacaactttagcctaaaataggcatgctttttttgttg |
423 |
Q |
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| T |
52074786 |
tttaaatttcaaattcttcaatattattaaaaaaaaaaaaaatactaattaacatatgaatttacaactttagcctaaaataggcatgctttttttgttg |
52074885 |
T |
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| Q |
424 |
gccggtcgannnnnnnnnnacaacaaggggtgattgatgctaatgagcagaacaaactaaactttgagtatgact |
498 |
Q |
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| T |
52074886 |
gccggttgattttctttttacaacaacgggtgattgatgctaatgagcagaacaaactaaactttgagtatgact |
52074960 |
T |
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