View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7943_low_12 (Length: 484)
Name: NF7943_low_12
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Complemental strand, 4946440 - 4946002
Alignment:
| Q |
20 |
atgaagttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttatatagagtcacaatacacgcataatactcgggtgatgactta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946440 |
atgaagttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttata--gagtcacaatacacgcataatactcgggtgatgactta |
4946343 |
T |
|
| Q |
120 |
aattatacacgtgtgaaatggattaatattgtttataatgtggctgatcccttttcactcgttaaatttagtcaaactatgggttctatggtcatcttat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4946342 |
aattatacacgtgtgaaatggattaatattgtttataatgcggctgatcccttttcactcgttaaatttagtcaaactatgggttctatagtcatcttat |
4946243 |
T |
|
| Q |
220 |
annnnnnnnnnnnttgcaacatcattttagcacgtccttttgagaatttaagctttatattttgttggacaacgcaatggatcaatgagatctaagatat |
319 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946242 |
actctctct----ttgcaacatcattttagcacgtccttttgagaatttaagctttaaattttgttggacaacgcaatggatcaatgagatctaagatat |
4946147 |
T |
|
| Q |
320 |
atcaggctgtctctcaatgttatattctcttatctatattataatattaattttttaaattattggtctgacacctagcttacgaaaattcccaataatt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4946146 |
atcaggctgtctctcaatgttatattctcttatctatgttataatattaattttttaaattattggtttggcacctagcttacgaaaattcccaataatt |
4946047 |
T |
|
| Q |
420 |
caaagaatttaagtgtcacttgagttaatttgtatatggtcttat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946046 |
caaagaatttaagtgtcacttgagttaatttgtatatggtcttat |
4946002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University