View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7943_low_13 (Length: 447)

Name: NF7943_low_13
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7943_low_13
NF7943_low_13
[»] chr1 (1 HSPs)
chr1 (18-321)||(21880191-21880503)
[»] chr7 (1 HSPs)
chr7 (18-321)||(22970122-22970434)
[»] chr3 (1 HSPs)
chr3 (18-321)||(49602743-49603056)
[»] chr8 (4 HSPs)
chr8 (18-321)||(12587193-12587509)
chr8 (18-222)||(27324409-27324623)
chr8 (218-321)||(27323205-27323308)
chr8 (204-319)||(35036079-35036198)
[»] chr6 (2 HSPs)
chr6 (174-321)||(6901002-6901149)
chr6 (18-172)||(6900647-6900803)
[»] chr2 (1 HSPs)
chr2 (171-319)||(22329701-22329848)
[»] chr5 (1 HSPs)
chr5 (171-305)||(35360378-35360511)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 21880503 - 21880191
Alignment:
Q  18 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttcttattccttannnnnnnnctttcttcctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||        || |||||||||    
T  21880503 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttatgtctctaatcttctcattccttattttttttctctcttcctcc 21880404  T
Q  118 attggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  21880403 attggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctatt 21880304  T
Q  209 attaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttacc 308  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21880303 attaccttgttgatattgaatttatgttgattgtgtaaaatttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttact 21880204  T
Q  309 gctattttattgc 321  Q
     ||||||||||||    
T  21880203 actattttattgc 21880191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 22970122 - 22970434
Alignment:
Q  18 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttcttattccttannnnnnnnctttcttcctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||        || |||||||||    
T  22970122 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttatgtctctaatcttctcattccttattttttttctctcttcctcc 22970221  T
Q  118 attggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttg---------tttattattgtaatgagagttaacatctatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  22970222 attggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctatt 22970321  T
Q  209 attaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttacc 308  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  22970322 attaccttgttgatattgaatttatgttgattgtaaaaaatttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttact 22970421  T
Q  309 gctattttattgc 321  Q
     ||||||||||||    
T  22970422 actattttattgc 22970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 49603056 - 49602743
Alignment:
Q  18 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttcttattccttannnnnnnn-ctttcttcctc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         || ||||||||    
T  49603056 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattccttatttttttttctctcttcctc 49602957  T
Q  117 cattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctat 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  49602956 cattggtggtgatctaagaggtacactctcttccttatttatatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctat 49602857  T
Q  208 tattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttac 307  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49602856 tattaccttgttgatattgaatttatgttgattgtacaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactctac 49602757  T
Q  308 cgctattttattgc 321  Q
      ||||||||||||    
T  49602756 tactattttattgc 49602743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 12587509 - 12587193
Alignment:
Q  18 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttcttattccttannnnnnnnctttct----tc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||          |||||    ||    
T  12587509 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctttttttttttttttctctcttc 12587410  T
Q  114 ctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatc 204  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  12587409 ctccattcatggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatc 12587310  T
Q  205 tattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12587309 tattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactt 12587210  T
Q  305 taccgctattttattgc 321  Q
    |||  ||||||||||||    
T  12587209 tactactattttattgc 12587193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 27324623 - 27324409
Alignment:
Q  18 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttcttattccttannnnnnnnctttcttcctcc 117  Q
    ||||||||| ||||||||||||||| |||| ||||||||||| || ||||| |||||||||||||||||||||||||||         || |||||||||    
T  27324623 atcaaccacttccacatccttgtttcaaaacaaaacttcctcctctttgttacttgtgtctctaatcttcttattcctttactattttctctcttcctcc 27324524  T
Q  118 attggtggtga---tctaagaggtacactctcttccttatttttatgattttaaactt---------atttgtttattattgtaatgagagttaacatct 205  Q
    |||||||||||   ||||||||||| || || |||  || ||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  27324523 attggtggtgatcttctaagaggtaaacccttttc--taattttatgattttaaacttatttgtttcatttgtttattattgtaatgagagttaacatct 27324426  T
Q  206 attattaccttgttgat 222  Q
    ||||| |||||||||||    
T  27324425 attatcaccttgttgat 27324409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 321
Target Start/End: Complemental strand, 27323308 - 27323205
Alignment:
Q  218 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||||| | | |||||||    
T  27323308 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttatttta 27323209  T
Q  318 ttgc 321  Q
    ||||    
T  27323208 ttgc 27323205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 35036079 - 35036198
Alignment:
Q  204 ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttga----taagtgattatttgggattattcaacaatctta 299  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |    |||||| || |||||||||||||||| ||| |     
T  35036079 ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg 35036178  T
Q  300 aactttaccgctattttatt 319  Q
    |||||| || ||||||||||    
T  35036179 aactttgccactattttatt 35036198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 6901002 - 6901149
Alignment:
Q  174 tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901002 tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga 6901101  T
Q  274 ttatttgggattattcaacaatcttaaactttaccgctattttattgc 321  Q
    |||||| ||||||||||||||| |||||||||||  ||||||||||||    
T  6901102 ttatttaggattattcaacaatattaaactttactactattttattgc 6901149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 6900647 - 6900803
Alignment:
Q  18 atcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttcttattcctta--nnnnnnnnctttcttcct 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          || |||||||    
T  6900647 atcaaccatatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattccttattttttttttctctcttcct 6900746  T
Q  116 ccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaactt 172  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6900747 ccattggtggtgatctaagaggtgcactctcttccttatttttatgattttaaactt 6900803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 22329848 - 22329701
Alignment:
Q  171 ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 270  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329848 ttatttgtttgttattgtaatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 22329749  T
Q  271 tgattatttgggattattcaacaatcttaaactttaccgctattttatt 319  Q
    ||||||||||||||||||  |||||||| || ||| | |||||||||||    
T  22329748 tgattatttgggattatt-tacaatcttgaattttgctgctattttatt 22329701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 35360511 - 35360378
Alignment:
Q  171 ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 270  Q
    ||||||||| ||||  |||| | |||||||  | |||||||||||||  |||||| || || ||||||| |||  ||||||||||||||||||| || ||    
T  35360511 ttatttgttaattacagtaacgtgagttaatttatattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-ag 35360413  T
Q  271 tgattatttgggattattcaacaatcttaaacttt 305  Q
    || |||||||| ||||||||||||| |||||||||    
T  35360412 tgtttatttggaattattcaacaattttaaacttt 35360378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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