View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_15 (Length: 408)
Name: NF7943_low_15
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 107 - 275
Target Start/End: Complemental strand, 42723350 - 42723182
Alignment:
| Q |
107 |
taaacaaccttttatcatttaagttatacttactcgacattttgcattatttaaaagacaaatactataagagtagtaaatagacttgactagtaatttg |
206 |
Q |
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| T |
42723350 |
taaacaaccttttatcatttaagttatacttactcgacattttgcattatttaaaagacaaatactataagagtagtaaatagacttgactagtaatttg |
42723251 |
T |
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| Q |
207 |
aattccccatgggtatattgtcagtaaattctattacaaatttcagatggatggtccattgtgttgcat |
275 |
Q |
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| T |
42723250 |
aatttcccatgggtatattgtcagtaaattctattacaaatttcagatggatggtccattgtgttgcat |
42723182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 42723136 - 42723056
Alignment:
| Q |
316 |
aataaagggtaacttccagttatttgggacttggaggaatgaggacacactagctaactttgtttataacttgagaataat |
396 |
Q |
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| T |
42723136 |
aataaagggtaacctccagttatttgggacttggaggaatgaggacacactagctaactttgtttataacttgagaataat |
42723056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 42723477 - 42723427
Alignment:
| Q |
57 |
aaaaacaacatgataaataatcatctaatacatacttcatttacacataat |
107 |
Q |
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| T |
42723477 |
aaaaacaacatgataaagaatcatctaatacatactttatttacacataat |
42723427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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