View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_18 (Length: 383)
Name: NF7943_low_18
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 31408743 - 31408634
Alignment:
| Q |
18 |
cttagcaagaatcctaacgttaagatcgctatcattgagcaatctgtgagtcctggtggtggtgcttggctaggtggccaactcttctctgcaatggtaa |
117 |
Q |
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| T |
31408743 |
cttagcaagaatcctaacgttaagatcgctatcattgagcaatctgtgagtcctggtggtggtgcttggctaggtggccaactcttctctgcaatggtaa |
31408644 |
T |
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| Q |
118 |
aatatacgat |
127 |
Q |
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| T |
31408643 |
aatatacgat |
31408634 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 31408576 - 31408492
Alignment:
| Q |
185 |
ataccatagttattgttactgcacattaattagtagtggccatctatgactttttggtgtgattcatttgaaatatgtcttattgtgtttta |
276 |
Q |
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| T |
31408576 |
ataccataattattgttactgcacatta-------gtggccatctatgactttttggtgtgattcatttgatatatgtcttattatgtttta |
31408492 |
T |
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