View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_2 (Length: 741)
Name: NF7943_low_2
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 66 - 624
Target Start/End: Complemental strand, 46699511 - 46698955
Alignment:
| Q |
66 |
aaaatgtcagattcagagtcaaattcagatgttttcagtgttcgaattgtctccatagaccattacatggcatcgccaatcccatccatcaatatctctc |
165 |
Q |
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| T |
46699511 |
aaaatgtcagattcagagtcaaattcagatgttttcagtgttcgaattgtctccgtagaccattacatggcatcgccaatcccatccatcgatatctctc |
46699412 |
T |
|
| Q |
166 |
acagcaccttccatcgtatgtttcacactaaaccctaattctttacactaaactctccattttgcgtttacaatattcacaaccctaacta---nnnnnn |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699411 |
acagcaccttccatcgtatgtttcacactaaaccctaattctttacactaaactctccattttgcgtttacaatattcacaaccctaactattttttttt |
46699312 |
T |
|
| Q |
263 |
nattcatactaactcaggtggaaaagtgaacgaagttcctgtaattagagtttatggttctactcctgctggccagaaaacttgcctgcacattcatgga |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699311 |
tattcatactaactcaggtggaaaagtgaacgaagttcctgtaattagagtttatggttctactcctgctggccagaaaacttgcctgcacattcatgga |
46699212 |
T |
|
| Q |
363 |
gtaagtttccatttcaatttttgttatattaaacaannnnnnnnnnnnaactgtttggatagttagttattatgtcattttctattacctgtgtcagcgt |
462 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
46699211 |
gtaagtttccatttcaatttttgttatatttaacaatttttgctttttaactgtttggatagttagttattatgtcattttctattaccggtgtcaacgt |
46699112 |
T |
|
| Q |
463 |
gtcattgttcgtgtccctgcttcatttatgctttgtatttacttaaatcttatttaccacttggtgctagtgctagcaattttgtaatcataaacaagat |
562 |
Q |
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| T |
46699111 |
gtcattgttcatgtccctgcttcatttatgctttgtatttacttaaatcttatttaccacttgttgccagtgctagcaattttgtaatcataaacaagat |
46699012 |
T |
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| Q |
563 |
tttaagttgttgtcactatatatatcgcgtctaaatg-ttttttagaaagttgtaatcttgat |
624 |
Q |
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| T |
46699011 |
tttaagttgttgtcac------tatggcgtctaaatgtttttttagaacgttgtaatcttgat |
46698955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 717
Target Start/End: Complemental strand, 46698955 - 46698918
Alignment:
| Q |
680 |
taaaacctctttcgtaaatgcaactagatagtttcagc |
717 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
46698955 |
taaaacctctgtcgtaaatgcaactagatagtttcagc |
46698918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 28848262 - 28848379
Alignment:
| Q |
56 |
aagaaagcaaaaaatgtcagattcagagtcaaattcagatgttttcagtgttcgaattgtctccatagaccattacatggcatcgccaatcccatccatc |
155 |
Q |
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||||||||||||||||||||||||| | | |||||||| ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
28848262 |
aagaaagcaaaaaatgtcagattcacaattaaattcagtggttttcaatgttcgaa----ctccatagaccattacatggtgctgccaaccccatccatt |
28848357 |
T |
|
| Q |
156 |
aatatctctcacagcaccttcc |
177 |
Q |
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|| ||||| |||||| ||||| |
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| T |
28848358 |
gatgtctctaacagcaacttcc |
28848379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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