View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_20 (Length: 376)
Name: NF7943_low_20
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 24 - 361
Target Start/End: Complemental strand, 3626561 - 3626224
Alignment:
| Q |
24 |
ggaataatattccgatgccggtgccatcaccggacccacgtttctcttctctcacggagcttaatgaaggtcatccttcaagaaatgtggtggagataat |
123 |
Q |
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| T |
3626561 |
ggaataatattccgatgccggtgccatcaccggacccacgtttctcttctttaacggagcttaatgaaggtcatccttcaagaaatgtggtggagataat |
3626462 |
T |
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| Q |
124 |
ctttcacactagctggggacccaaaccgttttcgggtcgggttgaaatgattttcaaggttcacaatggttcaagaacggtgactcggtttgaagagtat |
223 |
Q |
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| T |
3626461 |
ttttcacactagctggggacccaaaccgttttcgggtcgggttgaaatgattttcaaggttcacaatggttcaagaacggtgactcggtttgaagagtat |
3626362 |
T |
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| Q |
224 |
cgcgaaacggtgaaaactcgacccgggtcgaggaaccatgaagagaatgcaaggtgtgttgctgatgggaatgaagtaatgaggtttcattgtttgggac |
323 |
Q |
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| T |
3626361 |
cgcgaaacggtgaaaacccgacccgggtcgaggaaccatgaagagaatgctaggtgtgttgctgatgggaatgaagtaatgaggtttcattgtttgggac |
3626262 |
T |
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| Q |
324 |
ccacttccggtggtggtccctacggtggagcgtgtgtg |
361 |
Q |
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| T |
3626261 |
ccacttccggtggtggtccctacggtggagcttgtgtg |
3626224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 41957875 - 41957930
Alignment:
| Q |
266 |
gagaatgcaaggtgtgttgctgatgggaatgaagtaatgaggtttcattgtttggg |
321 |
Q |
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| T |
41957875 |
gagaatgcaaggtgtgttgctgatggaaatgaagtgatgcagtttcattgtttggg |
41957930 |
T |
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