View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_21 (Length: 366)
Name: NF7943_low_21
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 125 - 350
Target Start/End: Original strand, 22769891 - 22770116
Alignment:
| Q |
125 |
gctgcaccagaatgggatacaaaatgtgcagaagaaaaggcttcctgtggatatcttggggaaatctccttcccttttaccaccgtcgataaacgagaat |
224 |
Q |
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| T |
22769891 |
gctgcaccagaatgggatacaaaatgtgcaaaagaaaaagtttcctgtggatatcttggggaaatctccttcccttttaccaccgtcgataaacgagaat |
22769990 |
T |
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| Q |
225 |
gtggcttatacataatcggttgcgacaataacagttcagtgaaaacaatcaacctgataaaccaaacctatgaaattgatagcatcagttttatgaacaa |
324 |
Q |
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| T |
22769991 |
gtggcttatacataatcggttgcgacaataacagttcagtgaaaacaatcaacctgataaaccaaacctatgaaattgatagcatcagttatatgaacaa |
22770090 |
T |
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| Q |
325 |
ttcagttatcatctatggcctaaact |
350 |
Q |
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| T |
22770091 |
ttcagctatcatctatggcctaaact |
22770116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 22769782 - 22769843
Alignment:
| Q |
16 |
atatattcattcatatttctctccttaattaatctgtcattttttcatggcttcctacttag |
77 |
Q |
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| T |
22769782 |
atatattcattcatatttctctccttaattaatctgtcattttttcatggcttcctacttag |
22769843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 350
Target Start/End: Original strand, 22781314 - 22781494
Alignment:
| Q |
170 |
tgtggatatcttggggaaatctccttcccttttaccaccgtcgataaacgagaatgtggcttatacataatcggttgcgacaataacagttcagtgaaaa |
269 |
Q |
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| T |
22781314 |
tgtggatatcttggagaaatctcctcccctttcaccaccgttaatgactcagaatgtggctattacatatctggttgtgacaacagcagtttagtgaaaa |
22781413 |
T |
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| Q |
270 |
caatcaacctgataaaccaaacctatgaaattgatagcatcagttttatgaacaattcagttatcatctatggcctaaact |
350 |
Q |
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| T |
22781414 |
caattcaactcagagaccaaacctatataattgatagcatgtattatatgaacaattcaattatcatctatagcccaaact |
22781494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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