View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_23 (Length: 359)
Name: NF7943_low_23
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 33 - 354
Target Start/End: Complemental strand, 33699960 - 33699639
Alignment:
| Q |
33 |
cttgcatcattttcttcatcgatgttgccactggcaggacacacatcgctccaaggcgttaccactatttcattaatttatatatacaataattgcctat |
132 |
Q |
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| T |
33699960 |
cttgcatcattttcttcatcgatgttgccactggcaggacacacatcgctccaaggcgttaccactatttcattaatttatatatacaataattgcctat |
33699861 |
T |
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| Q |
133 |
gtttctatccatcaatcaaacactagcaagggtctaacatgcttattttaagcgtgaaaacaattatttttaacataacataattgtaatgacataagaa |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33699860 |
gtttctatccatcaatcaaacactagcaagggtctaacatgcttattttaagcgtgaaaaaaattatttttaacataacataattgtaatgacataagaa |
33699761 |
T |
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| Q |
233 |
tctttaagtagtacacaattaatagggtaggattaggtaatgaaaattttcactacacattttaaattatgagagtatagaaggagaacaaacctaacca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699760 |
tctttaagtagtacacaattaatagggtaggattaggtaatgaaaattttcactacacattttaaattatgagagtatagaaggagaacaaacctaacca |
33699661 |
T |
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| Q |
333 |
catcgtgattttctctgctact |
354 |
Q |
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|||||||||||||| ||||||| |
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| T |
33699660 |
catcgtgattttctttgctact |
33699639 |
T |
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