View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_24 (Length: 358)
Name: NF7943_low_24
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 53557749 - 53558081
Alignment:
| Q |
17 |
aaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcaaatatcaacaacagcttgatgaaccaaaaggacacaaatgga |
116 |
Q |
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| T |
53557749 |
aaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcgaatataaacaactgcttgatgaaccaaaaggacacaaatgga |
53557848 |
T |
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| Q |
117 |
atagatgagaattcttattcaaattcattaagtagctcagctcttgagagacttcaacttcatatgcaacttcaaagccttcaaaaccctttgtcttttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557849 |
atagatgagaattcttattcaaattcattaagtagctcagctcttgagagacttcaacttcatatgcaacttcaaagccttcaaaaccctttgtcttttt |
53557948 |
T |
|
| Q |
217 |
acagtaataaccctgctgcactagtttggccaaagttgcatccttctcaagaaaaaatgatccaaattagccttcaaaactctaataacaaccctatgat |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557949 |
acaataataaccctgctgcactagtttggccaaagttgcatccttctcaagaaaaaatgatccaaattagccttcaaaactctaataacaaccctatgat |
53558048 |
T |
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| Q |
317 |
gcaaaatgctttctcttcaccacaggttcatct |
349 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
53558049 |
gcaaaatgctttctcttcaccacaggttgatct |
53558081 |
T |
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