View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7943_low_26 (Length: 321)

Name: NF7943_low_26
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7943_low_26
NF7943_low_26
[»] chr4 (1 HSPs)
chr4 (16-307)||(41978198-41978491)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 41978491 - 41978198
Alignment:
Q  16 acatcatcgagacttcccatatttttctttgaattggattttgtatactttccgggagatagcggtgaatcttgttgggaataagctaacaaactagaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41978491 acatcatcgagacttcccatatttttctttgaattggattttgtatacttcccgggagatagcggtgaatcttgttgggaataagctaacaaactagaat 41978392  T
Q  116 ggattccaagccttgacttgctgacaggatcagtaagaattggagaagcatgagaaggctgcaaatccatttcacctaactaaactacttaaaagggtat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41978391 ggattccaagccttgacttgctgacaggatcagtaagaattggagaagcatgagaaggctgcaaatccatttcacctaactaaactacttaaaagggtat 41978292  T
Q  216 gtaaatatgtatgaacagaggc--nnnnnnnnngtttgtgttcaatgttatgatgagttttgtcgatgaacagaactgatttatacgaatcttt 307  Q
    |||| |||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41978291 gtaactatgtatgaacagaggcaaaaaaaaaaagtttgtgttcaatgttatgatgagttttgtcgatgaacagaactgatttatacgaatcttt 41978198  T

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