View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_33 (Length: 248)
Name: NF7943_low_33
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 5695365 - 5695150
Alignment:
| Q |
13 |
agcagagataatttgttgttgaaagcttgaattggggcttttgacacagtctcgactatatctttagaatgagtgatctgaattttgtctaataaatcaa |
112 |
Q |
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| T |
5695365 |
agcagggataatttgttgttgaaagcctgaattggggcttttgacacagtctcgactatgtctttagaatgagtgatctgaattttgtctaataaatcaa |
5695266 |
T |
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| Q |
113 |
atatatgtggtatcttaattgatgcttaagagaaaaataaatttacaatgtacaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaat |
212 |
Q |
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| T |
5695265 |
atttatgtggtatctgaattgatgtgttagagaaaaataaatttacaatgtacaaaatttgtacttcaaattacaatagttgcaaaaggtaaacttcaat |
5695166 |
T |
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| Q |
213 |
gtcattttctagtgtt |
228 |
Q |
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|||||||||||||||| |
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| T |
5695165 |
gtcattttctagtgtt |
5695150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 5744405 - 5744255
Alignment:
| Q |
79 |
gaatgagtgatctgaattttgtctaataaatcaaatatatgtggtatcttaattgatgcttaagagaaaaataaatttacaatgtacaaaatttgtacta |
178 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5744405 |
gaatgagtgatttgaattt-gtctaataaatcaaatatatgtggtatcttaattgatgctttagagaaaaataaatttacaatgtacaaaatttgtacta |
5744307 |
T |
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| Q |
179 |
caaattacaatagttgcaaaaggtaaacttcaatgtcattttctagtgttac |
230 |
Q |
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| T |
5744306 |
caaattacaatatttgcaaaaggtaaacttcaatgtcattttctagtgttac |
5744255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 5781364 - 5781214
Alignment:
| Q |
79 |
gaatgagtgatctgaattttgtctaataaatcaaatatatgtggtatcttaattgatgcttaagagaaaaataaatttacaatgtacaaaatttgtacta |
178 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5781364 |
gaatgagtgatttgaattt-gtctaataaatcaaatatatgtggtatcttaattgatgctttagagaaaaataaatttacaatgtacaaaatttgtacta |
5781266 |
T |
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| Q |
179 |
caaattacaatagttgcaaaaggtaaacttcaatgtcattttctagtgttac |
230 |
Q |
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| T |
5781265 |
caaattacaatatttgcaaaaggtaaacttcaatgtcattttctagtgttac |
5781214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 5789137 - 5788971
Alignment:
| Q |
64 |
tcgactatatctttagaatgagtgatctgaattttgtctaataaatcaaatatatgtggtatcttaattgatgcttaagagaaaaataaatttacaatgt |
163 |
Q |
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| T |
5789137 |
tcgactatgtctttagaatgagtgaactgaattttgtctaataaatcgaatatatgtggtatctgaagtgatgttttatagaataataaatttacaatgt |
5789038 |
T |
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| Q |
164 |
acaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaatgtcattttctagtgttac |
230 |
Q |
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| T |
5789037 |
acaaaatttgtactacaaaatacaataattgaaaaaggtaaacttcaatgtcattttcttgtgttac |
5788971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 5792589 - 5792423
Alignment:
| Q |
64 |
tcgactatatctttagaatgagtgatctgaattttgtctaataaatcaaatatatgtggtatcttaattgatgcttaagagaaaaataaatttacaatgt |
163 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||||| || | |||| |||||||||||||||| |
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| T |
5792589 |
tcgactatgtctttagattgagtgatctgaattttgtctaacaaatcaaatatatgtggtatctgaagtgatgttttatagaataataaatttacaatgt |
5792490 |
T |
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| Q |
164 |
acaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaatgtcattttctagtgttac |
230 |
Q |
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||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
5792489 |
acaaaatttgtactacaaaatacaataattgaaaaaggtaaacttcaatgtcattttcttgtgttac |
5792423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 5693025 - 5692919
Alignment:
| Q |
124 |
atcttaattgatgcttaagagaaaaataaatttacaatgtacaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaatgtcattttcta |
223 |
Q |
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||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5693025 |
atcttaagtgatttttcagagaaaaataaatatacaatgtacaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaatgtcattttcta |
5692926 |
T |
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| Q |
224 |
gtgttac |
230 |
Q |
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|||||| |
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| T |
5692925 |
ttgttac |
5692919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 5669330 - 5669222
Alignment:
| Q |
122 |
gtatcttaattgatgcttaagagaaaaataaatttacaatgtacaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaatgtcattttc |
221 |
Q |
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||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5669330 |
gtatcttaagtgattttttagagaaaaataaatatacaatgtacaaaatttgtactacaaattccaatagttgcaaaaggtaaacttcaatgtcattttc |
5669231 |
T |
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| Q |
222 |
tagtgttac |
230 |
Q |
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|| |||||| |
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| T |
5669230 |
tattgttac |
5669222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 5678833 - 5678725
Alignment:
| Q |
122 |
gtatcttaattgatgcttaagagaaaaataaatttacaatgtacaaaatttgtactacaaattacaatagttgcaaaaggtaaacttcaatgtcattttc |
221 |
Q |
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||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5678833 |
gtatcttaagtgatttttcagagaaaaataaatatacaatgtacaaaatttgtactacaaattccaatagttgcaaaaggtaaacttcaatgtcattttc |
5678734 |
T |
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| Q |
222 |
tagtgttac |
230 |
Q |
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|| |||||| |
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| T |
5678733 |
tattgttac |
5678725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 5744610 - 5744553
Alignment:
| Q |
23 |
atttgttgttgaaagcttgaattggggcttttgacacagtctcgactatatctttaga |
80 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
5744610 |
atttgttgttgaaagcttgaattggggcttttgacacagtctcggctatatcattaga |
5744553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 5781569 - 5781512
Alignment:
| Q |
23 |
atttgttgttgaaagcttgaattggggcttttgacacagtctcgactatatctttaga |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
5781569 |
atttgttgttgaaagcttgaattggggcttttgacacagtctcggctatatcattaga |
5781512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 5669385 - 5669340
Alignment:
| Q |
57 |
cacagtctcgactatatctttagaatgagtgatctgaattttgtct |
102 |
Q |
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|||||| |||||||| |||||||||||||| ||| ||||||||||| |
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| T |
5669385 |
cacagtgtcgactatgtctttagaatgagtaatccgaattttgtct |
5669340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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