View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_35 (Length: 240)
Name: NF7943_low_35
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 40855282 - 40855097
Alignment:
| Q |
17 |
aattgataatatcaaattaagattatttgtgaaaagataatgaaaagaaagtgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaag |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855282 |
aattgataatatcaaatcaagattatttgtgaaaagataatgaaaataaagcgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaag |
40855183 |
T |
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| Q |
117 |
ttgacaactatcaacaaatataaaaatagttagaacaacaacaacaacattaattagatgcagactgtaatcattacaccacaggt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
40855182 |
ttgacaactatcaacaaatataaaaatagttagaacaacaacaacaacattaattagatacggactgtaatcattacaccacaggt |
40855097 |
T |
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