View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_37 (Length: 231)
Name: NF7943_low_37
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 52734225 - 52734434
Alignment:
| Q |
15 |
atacaatgcaaaagaaaagttaaaaattggataaccaaaatttggaaccaaaccgcagaggtcatagaaagacacgaccaacaagaactcgtgtgcaaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
52734225 |
atacaatgcaaaagaaaagttaaaaattggataaccaaaatttggaaccaaaccgcagagttcatagaaagacacgaccaacaagaattcgtgtgcaaat |
52734324 |
T |
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| Q |
115 |
ggcgatgaacacgcaagtgacacctttc---atcccaaacctccaaaagagacagcctcaaaaccttaattttccaaacaaacattcatcaaaactcatt |
211 |
Q |
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||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
52734325 |
ggcgatgaacatgcaagtaacacctttcaatatcccaaacctccaaaagagacagcctcagaaccttaattttccaaacaaacattcatcaaaacccatt |
52734424 |
T |
|
| Q |
212 |
tgttcttctc |
221 |
Q |
| |
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|||| ||||| |
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| T |
52734425 |
tgttgttctc |
52734434 |
T |
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