View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_39 (Length: 230)
Name: NF7943_low_39
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 4792769 - 4792567
Alignment:
| Q |
16 |
agaaggagaagtgcaaatgtagtgtgttgtgtaatttcttttgcagggcatatctctccttcaactaatttttggctttttgaggagagtattgcagcag |
115 |
Q |
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| T |
4792769 |
agaaggagaaatgcaaatgtagtgtgttgtgtaatttcttttgcagggcatatctctccttcaactaatttatggctttttgaggagagtattgcagcag |
4792670 |
T |
|
| Q |
116 |
---taaataaaagattggcgaagctcttcattgtatttttctctagttgtatcgataaattagaccaattttcttaagtgttaaattagtgatcaattgt |
212 |
Q |
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| T |
4792669 |
taataaataaaagattggcgaagctcttcattgtatttttctctatttgtatcgataaattagactaatttccttaagtgttaaattagtgatcaattgt |
4792570 |
T |
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| Q |
213 |
ttt |
215 |
Q |
| |
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||| |
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| T |
4792569 |
ttt |
4792567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 2570 - 2694
Alignment:
| Q |
72 |
tccttcaactaatttttggctttttgaggagagtattgcagcagtaaataaaagattggcgaagctcttcattgtatttttctctagttgtatcgataaa |
171 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
2570 |
tccttcaattaatttttggctttttgaggagagtattgcagcagtaaataaaagattggcgaatctcttcattgtatttttctctagttctatcgataaa |
2669 |
T |
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| Q |
172 |
ttagaccaattttcttaagtgttaa |
196 |
Q |
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|||||||||||| |||||||||||| |
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| T |
2670 |
ttagaccaatttccttaagtgttaa |
2694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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