View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7943_low_4 (Length: 684)
Name: NF7943_low_4
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7943_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 23 - 397
Target Start/End: Original strand, 52583069 - 52583443
Alignment:
| Q |
23 |
agcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattcta |
122 |
Q |
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| T |
52583069 |
agcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattcta |
52583168 |
T |
|
| Q |
123 |
gtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatttattt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583169 |
gtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatttattt |
52583268 |
T |
|
| Q |
223 |
gggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatcatttc |
322 |
Q |
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| T |
52583269 |
gggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatcatttc |
52583368 |
T |
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| Q |
323 |
aaaagatgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
397 |
Q |
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| T |
52583369 |
aaaagatgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
52583443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 404 - 667
Target Start/End: Original strand, 52583650 - 52583930
Alignment:
| Q |
404 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
503 |
Q |
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| T |
52583650 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
52583749 |
T |
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| Q |
504 |
atttatacataaacacttatttgataaactctagcactta------------attcgaatactactcaagtatgatgcaattttctttattagtactagt |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583750 |
atttatacataaacacttatttgataaactctagcacttaattaagctttttattcgaatactactcaagtatgatgcaattttctttattagtactagt |
52583849 |
T |
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| Q |
592 |
gaacataaaatcag-----gaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgt |
667 |
Q |
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| T |
52583850 |
gaacataaaatcaggaagagaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgt |
52583930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 19395153 - 19395216
Alignment:
| Q |
431 |
aattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttt |
495 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||||| | |||| |||||||||||||||| |||| |
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| T |
19395153 |
aattctccaagatagctaatgaaaacattt-tatagcttatacaaaaacaatttgattttcgttt |
19395216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
488 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
530 |
Q |
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||||||| || |||||| ||||||||||||||||||||||||| |
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| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
488 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
530 |
Q |
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|||||||||| |||||||||||||||||| |||||| |||||| |
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| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 487 - 523
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
487 |
tttttgttttaaaaataatttatacataaacacttat |
523 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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