View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7943_low_5 (Length: 627)

Name: NF7943_low_5
Description: NF7943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7943_low_5
NF7943_low_5
[»] chr3 (10 HSPs)
chr3 (154-627)||(5448641-5449114)
chr3 (483-627)||(5457355-5457498)
chr3 (192-313)||(5457599-5457720)
chr3 (19-109)||(45511022-45511112)
chr3 (19-105)||(45512595-45512681)
chr3 (22-106)||(38525749-38525833)
chr3 (22-109)||(38524351-38524438)
chr3 (27-102)||(2753349-2753424)
chr3 (26-109)||(2766225-2766308)
chr3 (40-109)||(4273715-4273784)
[»] chr2 (11 HSPs)
chr2 (19-108)||(5062164-5062253)
chr2 (19-106)||(5060720-5060807)
chr2 (27-108)||(28240798-28240879)
chr2 (27-109)||(28239353-28239435)
chr2 (42-109)||(3833507-3833574)
chr2 (42-107)||(26380769-26380834)
chr2 (28-110)||(26271611-26271693)
chr2 (34-92)||(26379383-26379441)
chr2 (43-105)||(36404396-36404458)
chr2 (18-108)||(36681094-36681184)
chr2 (18-110)||(36682356-36682448)
[»] chr4 (12 HSPs)
chr4 (27-111)||(44491716-44491800)
chr4 (27-107)||(44493203-44493283)
chr4 (19-105)||(32133464-32133550)
chr4 (40-109)||(11384191-11384260)
chr4 (28-110)||(11385689-11385771)
chr4 (25-97)||(29215045-29215117)
chr4 (41-112)||(1560051-1560122)
chr4 (40-105)||(29213931-29213996)
chr4 (22-107)||(56338435-56338519)
chr4 (19-109)||(32135016-32135107)
chr4 (40-106)||(2274122-2274187)
chr4 (41-95)||(21072175-21072229)
[»] chr8 (12 HSPs)
chr8 (19-109)||(43711585-43711675)
chr8 (40-109)||(42127359-42127428)
chr8 (27-110)||(42128857-42128940)
chr8 (43-110)||(2376913-2376980)
chr8 (42-108)||(38119724-38119790)
chr8 (27-91)||(45015326-45015390)
chr8 (19-112)||(28325055-28325154)
chr8 (27-110)||(6133722-6133805)
chr8 (27-108)||(6132432-6132512)
chr8 (41-109)||(4629717-4629785)
chr8 (19-106)||(28322717-28322804)
chr8 (27-89)||(43713162-43713224)
[»] chr6 (5 HSPs)
chr6 (41-108)||(22970091-22970158)
chr6 (41-108)||(23818236-23818303)
chr6 (43-108)||(22971464-22971529)
chr6 (43-108)||(23816869-23816934)
chr6 (27-108)||(20487280-20487361)
[»] chr5 (4 HSPs)
chr5 (41-90)||(8284961-8285010)
chr5 (41-110)||(35237285-35237354)
chr5 (40-109)||(35238106-35238175)
chr5 (34-109)||(40415792-40415867)
[»] chr1 (2 HSPs)
chr1 (41-110)||(48678077-48678146)
chr1 (41-108)||(48676915-48676982)
[»] scaffold0912 (1 HSPs)
scaffold0912 (43-108)||(1597-1662)
[»] chr7 (1 HSPs)
chr7 (22-110)||(18852897-18852985)


Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 154 - 627
Target Start/End: Complemental strand, 5449114 - 5448641
Alignment:
Q  154 cctttaaacaatatcatcaaattgtttgatattatactatagcgggaagatctcatcaactctgcagtaaggaacaatggctccgcattttcttagcttc 253  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  5449114 ccttcaaacaatatcataaaattgtttgatattacactatagcgggaagatttcatcaactccgcagtaaggaacaatggctccgcattttcttagcttc 5449015  T
Q  254 cttccattcctccactccgagaattttgatctcagctgcaacgatgccgtttcttagcggctgccgctggtttacgctttgatttgagtgagaatgaaga 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5449014 cttccattcctccactccgagaattttgatctcagctgcaacgatgccgtttcttagcagctgccgctggtttacgctttgatttgagtgagaatgaaga 5448915  T
Q  354 taaaagattgtggcgtaagttttaagttttaaatattacaattctatttgtattgtttgaaaattcgcttgtgttatacactacatacaaattcaatgat 453  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  5448914 taaaagattgtggcgtaagttttaagttttacaaattacaattctatttgtattgtttgaaatttcgtttgtgttatacactacataccaattcaatgat 5448815  T
Q  454 cactgtatggttgaggtctctacatgcatacgtttatgataagttgttgtttctagtaataatagtcattgttgttattgttgatgtttcaatccaaata 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5448814 cactgtatggttgaggtctctacatgcatacgtttatgataagttgttgtttctagtaataatagtcattgtagttattgttgatgtttcaatccaaata 5448715  T
Q  554 ccccatttcacaggcaactctatataacttaaagttgaatacgactttaatttgtactatatcacatgcttctt 627  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  5448714 ccccatttcacaggcaactctatataacttaaaattgaataagactttaatttgtactatatcacatgcttctt 5448641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 483 - 627
Target Start/End: Complemental strand, 5457498 - 5457355
Alignment:
Q  483 acgtttatgataagttgttgtttctagtaataatagtcatt-gttgttattgttgatgtttcaatccaaataccccatttcacaggcaactctatataac 581  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||  ||| ||    
T  5457498 acgtttatgagaagttgttgtttctagtaagaatagtcatttgttgttattgttgatgtttcaatccaaataacccatttcacaggtaactc--tatgac 5457401  T
Q  582 ttaaagttgaatacgactttaatttgtactatatcacatgcttctt 627  Q
    ||||||||||||| |||||||||||||  || |||||| |||||||    
T  5457400 ttaaagttgaataagactttaatttgttttacatcacaggcttctt 5457355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 192 - 313
Target Start/End: Complemental strand, 5457720 - 5457599
Alignment:
Q  192 atagcgggaagatctcatcaactctgcagtaaggaacaatggctccgcattttcttagcttccttccattcctccactccgagaattttgatctcagctg 291  Q
    ||||||||||||| | |||||||||| || ||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5457720 atagcgggaagatttgatcaactctgtagcaagaaacaatgggtccgctttttcttagcttccttccatttctccactccgagaattttgatctcagctg 5457621  T
Q  292 caacgatgccgtttcttagcgg 313  Q
    |||||  |||||||||| ||||    
T  5457620 caacggcgccgtttctttgcgg 5457599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 45511112 - 45511022
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    ||||||||| || | |||||| ||||||||||||| ||||||| | | ||||||||||||||||||||||| ||||||| |||||||||||    
T  45511112 aacttatggaactaaaatgaggcgaaaattaataaagggaccatattgaaatctcataattatttaagggagcatttatgtaattaagcct 45511022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 45512595 - 45512681
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 105  Q
    |||||||| |||||||||| | ||||| |||||||||||  || | | |||||||||||||||||||||||||||||||||||||||    
T  45512595 aacttatgagaccagaatggggcgaaagttaataagggggtcatattgaaatctcataattatttaagggaccatttatataattaa 45512681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 38525749 - 38525833
Alignment:
Q  22 ttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 106  Q
    |||| |||||| | ||| || ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  38525749 ttataggaccatattgaaacaaaaattactaaggggaccaaaatgaaatctcataattagttaagggaccatttatgtaattaag 38525833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 38524438 - 38524351
Alignment:
Q  22 ttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    ||||||||||| | ||  || ||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  38524438 ttatgggaccatattggaacaaaaattattaatgggaccaaaatgaaatctcataattagttaagggaccatttatgtaattaagcct 38524351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 2753349 - 2753424
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataat 102  Q
    |||||| |||||| |||||||||||||||||| || | ||||| |||||||||| ||||||||||||| |||||||    
T  2753349 ggaccaaaatgaggcgaaaattaataaggggatcatattaaaaactcataattagttaagggaccattgatataat 2753424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 2766308 - 2766225
Alignment:
Q  26 gggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    ||||||| |||||| |||||||||||||||||||||   ||||| |||||||||| |||||||| ||||||| | |||||||||    
T  2766308 gggaccaaaatgaggcgaaaattaataaggggaccatgttaaaaactcataattaattaagggatcatttatgttattaagcct 2766225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 4273784 - 4273715
Alignment:
Q  40 acgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||||| ||||||| ||  | |||||||||||||||||| |||| |||  |||||| |||||||||||    
T  4273784 acgaaaatgaataaggagattataataaaatctcataattagttaaaggattatttatgtaattaagcct 4273715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5062164 - 5062253
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  5062164 aacttatgggatcagaatgagatgaaaattaataaggggaccaaaatgaaatctcataattatttaagggaccatttatgtaattaagcc 5062253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 5060807 - 5060720
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 106  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  5060807 aacttatgggactagaatgagacgaaaattaataaggggatcaaaatgaaatctcataattatttaagggaccatttatgtaattaag 5060720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 28240798 - 28240879
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    |||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  28240798 ggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagcc 28240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 28239435 - 28239353
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||| |||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||    
T  28239435 ggaccaaaatgggacgaaaattattaaggggaccaaattgaaatctcataattatttaagggaccatttatgtatttaagcct 28239353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 3833574 - 3833507
Alignment:
Q  42 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    ||||||||||||| |||| |||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  3833574 gaaaattaataagaggactaaatcaaaatctcataattatttaagggaccaattatataattaagcct 3833507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 26380769 - 26380834
Alignment:
Q  42 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagc 107  Q
    ||||||||||||| ||||||||  ||||| ||||||||||||||||||| |||| |||||||||||    
T  26380769 gaaaattaataagaggaccaaatcaaaatttcataattatttaagggacaatttgtataattaagc 26380834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 26271693 - 26271611
Alignment:
Q  28 gaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    ||||| |||| || |||||||| ||| ||||||||| | |||| ||||||||||||||||||||| | || ||||||||||||    
T  26271693 gaccaaaatgggatgaaaattattaaagggaccaaattgaaatttcataattatttaagggaccaatcatgtaattaagcctt 26271611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 26379441 - 26379383
Alignment:
Q  34 aatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggacca 92  Q
    |||| |||||||||||||||| || ||||| |||||| |||||||||||||||||||||    
T  26379441 aatgggacgaaaattaataagaggtccaaattaaaatttcataattatttaagggacca 26379383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 36404396 - 36404458
Alignment:
Q  43 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 105  Q
    ||||||||||| ||||||||||| |||||| ||||||| |||| ||||||||||| |||||||    
T  36404396 aaaattaataatgggaccaaaatgaaatcttataattagttaaaggaccatttatgtaattaa 36404458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 36681184 - 36681094
Alignment:
Q  18 aaacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||| | | ||| ||||||||||||   |||||||| || |||||||||||||| |||||||||||||  | ||||||||||    
T  36681184 aaacttatgggacaaaattgaaacgaaaattaattgtgggaccaatatgaaatctcataattagttaagggaccattcttgtaattaagcc 36681094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 36682356 - 36682448
Alignment:
Q  18 aaacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    ||||||||||||||| | ||| ||||||||||||   || |||||  | |||||||||||||| ||||||||| |||  | ||||||||||||    
T  36682356 aaacttatgggaccaaactgaaacgaaaattaattgtggaaccaatgtgaaatctcataattagttaagggactattcttgtaattaagcctt 36682448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 44491800 - 44491716
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctta 111  Q
    |||||| |||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||    
T  44491800 ggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcctta 44491716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 44493203 - 44493283
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagc 107  Q
    |||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  44493203 ggaccaaaatgaggcgaaaattaataaagggaccaaattaaaatctcataattatttaagggaccatttatgtaattaagc 44493283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 32133550 - 32133464
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 105  Q
    |||||||| || ||||||| | ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  32133550 aacttatgagatcagaatggggcgaaaattaataaggggaccatattgaaatctcataattatttaagggaccatttatataattaa 32133464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 11384260 - 11384191
Alignment:
Q  40 acgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  11384260 acgaaaattattaatgggaccaaattgaaatctcataattatttaagggaccatttatataattaagcct 11384191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 11385689 - 11385771
Alignment:
Q  28 gaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    ||||| |||| |||||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||    
T  11385689 gaccaaaatgggacgaaaattaataaatggaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcctt 11385771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 29215045 - 29215117
Alignment:
Q  25 tgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttat 97  Q
    |||||||| | ||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  29215045 tgggaccatattgaaacgaaatttaataaggggaccaacataaaatctcataattagttaagggaccatttat 29215117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 1560122 - 1560051
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagccttaa 112  Q
    |||||||||||||||||| |||| | |||| |||||||||||||||||| ||||||| ||||||||||||||    
T  1560122 cgaaaattaataaggggatcaaattgaaatttcataattatttaagggatcatttatgtaattaagccttaa 1560051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 29213996 - 29213931
Alignment:
Q  40 acgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 105  Q
    ||||||||||||||||| ||||| || ||||||||| |||| ||||||||||||||||||||||||    
T  29213996 acgaaaattaataagggaaccaacatgaaatctcatcattagttaagggaccatttatataattaa 29213931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 56338435 - 56338519
Alignment:
Q  22 ttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagc 107  Q
    ||||||||||| | ||  || |||||||||||||  ||||| ||||||||||||||||| |||| |||||||||||||||||||||    
T  56338435 ttatgggaccacattggaacaaaaattaataaggaaaccaacataaaatctcataattagttaa-ggaccatttatataattaagc 56338519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 32135016 - 32135107
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaa-ttaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||||||||| | |||||  |||||| ||||||| ||||||| | | |||||||||||| |||||||||| ||||||| |||||||||||    
T  32135016 aacttatgggactaaaatgaagcgaaaaattaataaagggaccatattgaaatctcataatgatttaagggagcatttatgtaattaagcct 32135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 2274187 - 2274122
Alignment:
Q  40 acgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 106  Q
    |||||||||||||||||| |||| || |||||||||||||| || || |||||||||||||||||||    
T  2274187 acgaaaattaataagggggccaatatgaaatctcataattagtt-agagaccatttatataattaag 2274122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 21072175 - 21072229
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccattt 95  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||| ||||    
T  21072175 cgaaaattaataaggggaccaacatgaaatctcataattagttaagggactattt 21072229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 43711675 - 43711585
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||||||||||||||||   ||||||||||||| |||| || | | ||||||||||||||||||||||||||||||| |||||||||||    
T  43711675 aacttatgggaccagaatggagcgaaaattaataaagggatcatattgaaatctcataattatttaagggaccatttatgtaattaagcct 43711585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 42127428 - 42127359
Alignment:
Q  40 acgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  42127428 acgaaaattattaaggggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcct 42127359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 42128857 - 42128940
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    |||||| |||| ||||||||||||||| || |||||| | ||||||||||||||||||| ||||||||||| ||||||||||||    
T  42128857 ggaccaaaatgggacgaaaattaataaaggaaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcctt 42128940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 2376980 - 2376913
Alignment:
Q  43 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||||||||||| ||||||||||||    
T  2376980 aaaattaataaggggatcaaattgaaatttcataattatttaagggaccatttatgtaattaagcctt 2376913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 38119790 - 38119724
Alignment:
Q  42 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||  |||||||||||||||||||||    
T  38119790 gaaaattaataagaggaccaaattaaaatttcataattatttaaaagaccatttatataattaagcc 38119724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 45015390 - 45015326
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggacc 91  Q
    |||||| |||| |||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  45015390 ggaccaaaatgggacgaaaattaataaggggatcaaattaaaatttcataattatttaagggacc 45015326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 28325055 - 28325154
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaa---ata---aaatctcataattatttaagggaccatttatataattaagccttaa 112  Q
    ||||||||||| || |||| | ||||||||||||||||||||| |   |||   |||||||||||||||||||| |||||||||| ||||||||||||||    
T  28325055 aacttatgggatcataatggggcgaaaattaataaggggaccatatatatattgaaatctcataattatttaagcgaccatttatctaattaagccttaa 28325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 6133722 - 6133805
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    |||||| |||| | ||||||||||||||  ||| |||   |||| |||||||||||||||||||||||| ||||||||||||||    
T  6133722 ggaccaaaatggggcgaaaattaataagaagacaaaatcgaaatttcataattatttaagggaccatttgtataattaagcctt 6133805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 6132512 - 6132432
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    |||||| ||||  ||||||||||||||| ||||||||  ||||| ||||||||| |||||||||||||| | ||||||||||    
T  6132512 ggaccaaaatggaacgaaaattaataagaggaccaaatcaaaatttcataatta-ttaagggaccatttgtgtaattaagcc 6132432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 4629717 - 4629785
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    ||||||||||||||||||| ||| | ||||||| |||||||||||||||| | | || |||||||||||    
T  4629717 cgaaaattaataaggggactaaattgaaatctcctaattatttaagggacaagtcatgtaattaagcct 4629785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 28322804 - 28322717
Alignment:
Q  19 aacttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 106  Q
    |||||||||||||| ||||    ||||||||||||| ||| || | | |||||||||||||||||||||||| |||||| | ||||||    
T  28322804 aacttatgggaccataatggagggaaaattaataagtggatcatattgaaatctcataattatttaagggactatttatgtcattaag 28322717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 43713162 - 43713224
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaaggga 89  Q
    |||||| |||| |||||||| || |||||||| |||| | |||| ||||||||||||||||||    
T  43713162 ggaccaaaatgggacgaaaactattaaggggatcaaattgaaatttcataattatttaaggga 43713224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 22970158 - 22970091
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  22970158 cgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 22970091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 23818236 - 23818303
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  23818236 cgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 23818303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 22971464 - 22971529
Alignment:
Q  43 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||    
T  22971464 aaaattaataaggggaccaaattgaaatttcataattatttaagggactatttatataattaagcc 22971529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 23816934 - 23816869
Alignment:
Q  43 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||    
T  23816934 aaaattaataaggggaccaaattgaaatttcataattatttaagggactatttatataattaagcc 23816869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 20487280 - 20487361
Alignment:
Q  27 ggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    |||||| |||||||| ||||||||| | ||||||||||  || | |  ||||||||||||||||||  ||||||||||||||    
T  20487280 ggaccaaaatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 20487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 8284961 - 8285010
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggac 90  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  8284961 cgaaaattaataaggggaccaaattaaaatttcataattatttaagggac 8285010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35237354 - 35237285
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    ||||||||||||| ||||| ||| | |||| ||||||||| ||||| |||||||||||||||||| ||||    
T  35237354 cgaaaattaataaagggactaaattgaaatttcataattacttaagagaccatttatataattaaacctt 35237285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 35238106 - 35238175
Alignment:
Q  40 acgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    ||||||||||||||  ||| |||| | |||| | |||||||||||||| |||||||||||||||||||||    
T  35238106 acgaaaattaataaaaggatcaaattgaaattttataattatttaaggaaccatttatataattaagcct 35238175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 40415792 - 40415867
Alignment:
Q  34 aatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 109  Q
    |||||| |||||||||||||||||| || | | ||| |||||||||| ||||| |||||||| |||||| ||||||    
T  40415792 aatgaggcgaaaattaataaggggatcatattgaaaactcataattagttaagagaccatttgtataatcaagcct 40415867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 48678077 - 48678146
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||| |||| ||||||||| |||||||    
T  48678077 cgaaaattaataaagggaccaaatcgaaatctcataattatttaaggaaccaattatataataaagcctt 48678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 48676982 - 48676915
Alignment:
Q  41 cgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    |||||||||||||| |||  |||   ||||||||||||||||||||  |||| |||||||||||||||    
T  48676982 cgaaaattaataagaggatgaaatcgaaatctcataattatttaagccaccaattatataattaagcc 48676915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 1662 - 1597
Alignment:
Q  43 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 108  Q
    ||||||||||||||||  || ||||||||||||| ||| |||| ||| ||||||| ||||||||||    
T  1662 aaaattaataaggggattaacataaaatctcatagttagttaatggatcatttatgtaattaagcc 1597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 18852897 - 18852985
Alignment:
Q  22 ttatgggaccagaatgagacgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 110  Q
    ||||||||||| | |||  ||||||||||| |  || |||| || |||| ||||||||| |||||||| ||||||| ||||||||||||    
T  18852897 ttatgggaccaaattgaagcgaaaattaattacagggccaatatgaaatttcataattagttaagggatcatttatgtaattaagcctt 18852985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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