View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7944_high_1 (Length: 555)
Name: NF7944_high_1
Description: NF7944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7944_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 34945114 - 34944593
Alignment:
| Q |
18 |
acttgatatcaaacacacacaaataaaataaagatggtaggtagctgataatgattttttaccatgtaaaattatttttaaccagtatactaattggcct |
117 |
Q |
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| T |
34945114 |
acttgatatcaaacacaca--aataaaataaagatggtaggtagctgataatgattttttaccatataaaattatttttaaccagtatactaattggcct |
34945017 |
T |
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| Q |
118 |
tgtacccataaataaagactaaccaatgacccttcatctaattacttcatttgttagtgatggcaagtgtcaccaaactaatactatttactagtatttt |
217 |
Q |
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| T |
34945016 |
tgtacccataaataaagactatc-aatgacccttcatctaattacttcatttgttagtgatggcaagtgtcaccaaactaatactatttactagtatttt |
34944918 |
T |
|
| Q |
218 |
attgaatacccataacataactattacatatgataattccagggcaaannnnnnnnnctatactttatcaaggttatattctagagttatgttggtggga |
317 |
Q |
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| T |
34944917 |
attgaatacccataac-----tattacatttgataattccagggcaaaatttttttgctatactttatcaaggttatattctagagttatgttggtgg-a |
34944824 |
T |
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| Q |
318 |
tcttagtaactattaattatgtagcacaacatttcatattgaacgtctgtttgctgtccgacacatgttggtatccgataccaatatgatattgacatat |
417 |
Q |
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| T |
34944823 |
tcttagtaactattaattatgtagcacaacatttcatattgaacgtctatttggtgtccgacacatgttggtatcggataccaatacgatattgatatat |
34944724 |
T |
|
| Q |
418 |
gcagttacatttaatttannnnnnnaagactattattgatattgaatgctggtatattatgcagatgactacctgagtcagcagtgcagccaaacattca |
517 |
Q |
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| T |
34944723 |
gcagttacatttaatttatttttttaagactattatcgatattgaatgctggtatattatgcagatgactacctgagtcagcagtgcagccaaacattca |
34944624 |
T |
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| Q |
518 |
tagactgcatggaaaaatttaggaacacgaa |
548 |
Q |
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| T |
34944623 |
tagactgcatggaaaaatttaggaacacgaa |
34944593 |
T |
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Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 9055687 - 9055748
Alignment:
| Q |
335 |
tatgtagcac-aacatttcatattgaacgtctgtttgctgtccgacacatgttggtatccga |
395 |
Q |
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| T |
9055687 |
tatgtagcaccaacactttatattgaacgtctgtttgctgtctgacacatgctggtgtccga |
9055748 |
T |
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