View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7944_high_2 (Length: 452)

Name: NF7944_high_2
Description: NF7944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7944_high_2
NF7944_high_2
[»] chr6 (22 HSPs)
chr6 (18-439)||(5100394-5100815)
chr6 (18-374)||(5135559-5135916)
chr6 (18-183)||(5351698-5351855)
chr6 (208-430)||(5351846-5352065)
chr6 (23-121)||(5398379-5398477)
chr6 (216-346)||(5242120-5242249)
chr6 (37-112)||(5255975-5256050)
chr6 (221-366)||(5398520-5398660)
chr6 (22-121)||(5242332-5242429)
chr6 (28-103)||(5439361-5439436)
chr6 (22-112)||(5180635-5180725)
chr6 (23-103)||(5352700-5352780)
chr6 (43-121)||(5334453-5334532)
chr6 (34-112)||(5448965-5449043)
chr6 (59-112)||(5283100-5283153)
chr6 (221-285)||(5687599-5687661)
chr6 (208-282)||(5334567-5334640)
chr6 (22-110)||(5155843-5155931)
chr6 (282-374)||(5155662-5155755)
chr6 (281-330)||(2939370-2939419)
chr6 (283-313)||(5098691-5098721)
chr6 (385-429)||(5427325-5427369)
[»] chr3 (8 HSPs)
chr3 (35-110)||(47985223-47985298)
chr3 (35-110)||(47994510-47994585)
chr3 (35-110)||(48003797-48003872)
chr3 (35-110)||(48013082-48013157)
chr3 (221-312)||(47985060-47985151)
chr3 (221-312)||(47994347-47994438)
chr3 (221-312)||(48003634-48003725)
chr3 (221-312)||(48012919-48013010)
[»] scaffold1476 (1 HSPs)
scaffold1476 (80-145)||(163-228)
[»] chr2 (1 HSPs)
chr2 (76-145)||(22583209-22583280)
[»] scaffold0294 (1 HSPs)
scaffold0294 (24-76)||(7741-7793)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 5100815 - 5100394
Alignment:
Q  18 accatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100815 accatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatag 5100716  T
Q  118 taaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggcttacaggtcgctctgtcattgtctgatttttggtc 217  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |  ||| ||||||||||||||||||||||    
T  5100715 taatgcaatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccatttttggcttacaagctgctttgtcattgtctgatttttggtc 5100616  T
Q  218 tgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccat 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100615 tgtagtttctagattttatccttggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccat 5100516  T
Q  318 ttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagctgccaagaa 416  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5100515 ttaaatgtcttttaacaaaatggactcaaatagttatagcatttaaatgtttagc-aaacttctgtagtcctaaataataggatatatagctgccaagaa 5100417  T
Q  417 taaactctgatttgaacaatgag 439  Q
     ||||||||||||||||||||||    
T  5100416 gaaactctgatttgaacaatgag 5100394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 5135916 - 5135559
Alignment:
Q  18 accatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatag 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5135916 accatctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatggaagatag 5135817  T
Q  118 taaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggcttacaggtcgctctgtcattgtctgatttttggtc 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |  ||||||||||||||||||||||||||    
T  5135816 taaagcaatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccatttttggcttacaagctgctctgtcattgtctgatttttggtc 5135717  T
Q  218 tgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccat 317  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5135716 tgtagtttctagattttattcttggtgaatttttgtattcaaaaagagttctgaaagattctaatttgttctgttacaattcttccatgttatataccat 5135617  T
Q  318 ttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa 374  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5135616 ttaaatgtcttttaacaaaatggactcaaatagttatagcatttaaatgtttagcaaa 5135559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 5351698 - 5351855
Alignment:
Q  18 accatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||        | ||||||||||    
T  5351698 accatctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtgg--------attgaaagatag 5351789  T
Q  118 taaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggct 183  Q
    |||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||| || |||||    
T  5351790 taaagcaatggcggagcaaaaatcaattttatggtgacggctaacaattgttttccatttttggct 5351855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 208 - 430
Target Start/End: Original strand, 5351846 - 5352065
Alignment:
Q  208 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgt 307  Q
    |||||||| ||||||||||| ||||||||||  | ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  5351846 atttttgg-ctgtagtttcttgattttatccatgttgaattttt-tattcacaaagagtggtgaaagattctaatttgttctgttacaattgttccatgt 5351943  T
Q  308 catataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatag 406  Q
    ||| ||| ||||||| ||||||||||||||||| ||   |||| || |||||||||||||| || ||| |||||||| || | ||| |||| ||||||      
T  5351944 catgtactatttaaaagtcttttaacaaaatgggct-ttatagttacagcatttaaatgttaag-aaagcttctgtactcatgaatgatagcatatatga 5352041  T
Q  407 ctgccaagaataaactctgatttg 430  Q
    |||||||||| |||||||||||||    
T  5352042 ctgccaagaagaaactctgatttg 5352065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 5398379 - 5398477
Alignment:
Q  23 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaa 121  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||    
T  5398379 ctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaagccgagttgaatgaatcaatgaaagatggtaaa 5398477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 5242249 - 5242120
Alignment:
Q  216 tctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatatacc 315  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||| |||||  |||||| |||||||||||| ||||| ||||||| |||||||| ||||    
T  5242249 tctgtagtttctagattttatccatggtgaattttt-tattgacagagagtggtgaaagtttctaatttgttatgttataattctttcatgtcatgtacc 5242151  T
Q  316 atttaaatgtcttttaacaaaatggactcaa 346  Q
    ||||||||||||||||||||||||| |||||    
T  5242150 atttaaatgtcttttaacaaaatgggctcaa 5242120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 5256050 - 5255975
Alignment:
Q  37 tctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5255975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 5398520 - 5398660
Alignment:
Q  221 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccattta 320  Q
    ||||||||||||||||||  ||||||||||| ||||||    ||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5398520 agtttctagattttatccatggtgaattttt-tattca----gagtggtgaaagattctaatttgttctgttacaattcttccatgtcatgtactattta 5398614  T
Q  321 aatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgt 366  Q
    || |||||||||| |||||||||| ||||| |||||||||| |||||    
T  5398615 aaagtcttttaactaaatggactc-aatagttatagcatttcaatgt 5398660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 5242429 - 5242332
Alignment:
Q  22 tctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaa 121  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  |||||||| ||||||||||| ||||||||||||| |||||    
T  5242429 tctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatcgagtggaatgtatcaatgaaagatggtaaa 5242332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 5439361 - 5439436
Alignment:
Q  28 aagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 103  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  5439361 aagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaa 5439436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 5180725 - 5180635
Alignment:
Q  22 tctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 112  Q
    ||||| |||||||||||| ||||||| || | | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180725 tctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 5352780 - 5352700
Alignment:
Q  23 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 103  Q
    |||||||||||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5352780 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 5352700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 5334453 - 5334532
Alignment:
Q  43 gaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaacc-gagtggaatgaatcaatgaaagatagtaaa 121  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||| |||||    
T  5334453 gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaagcctgagtggaatgaatctatgaaagatggtaaa 5334532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 5448965 - 5449043
Alignment:
Q  34 ttctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 112  Q
    |||||||||||||| || ||| | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  5448965 ttctctactgaagacgatcccgcagatgacttcaatcagaacagaaagaagaaaaatcaagtagaatgaatcaatgaaa 5449043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 5283153 - 5283100
Alignment:
Q  59 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5283153 atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5283100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 5687599 - 5687661
Alignment:
Q  221 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttg 285  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  5687599 agtttctagattttatcc--ggtgaatttttgtattcacaaagagttttgaaagattctaatttg 5687661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 5334567 - 5334640
Alignment:
Q  208 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaat 282  Q
    |||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||    
T  5334567 atttttgg-ctgaagtttctagattttatccatggtgaatttttgtattcacaaagagtggtgaaagattctaat 5334640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 5155931 - 5155843
Alignment:
Q  22 tctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 110  Q
    ||||||||||||||  || |||||| ||| |||| |||||||| |||||| |||||||||||||||  ||  |||||||||||||||||    
T  5155931 tctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaaagaagaaaggccaggtggaatgaatcaatga 5155843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 5155755 - 5155662
Alignment:
Q  282 tttgttctgttacaattcttccatgtcatataccatttaaatgtc-ttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa 374  Q
    |||||||||||||||||| |||||||||  |||||||||||| || ||||||| |||||||||  ||||| ||||| || |||||||||||||||    
T  5155755 tttgttctgttacaattcgtccatgtcacgtaccatttaaatatctttttaaccaaatggact-gaatagctatagtatctaaatgtttagcaaa 5155662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 2939370 - 2939419
Alignment:
Q  281 atttgttctgttacaattcttccatgtcatataccatttaaatgtctttt 330  Q
    |||||||||||||| |||| |||||||||| |||||||||||| ||||||    
T  2939370 atttgttctgttacgattcatccatgtcatgtaccatttaaatatctttt 2939419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 5098691 - 5098721
Alignment:
Q  283 ttgttctgttacaattcttccatgtcatata 313  Q
    |||||||||||||||||||||||||||||||    
T  5098691 ttgttctgttacaattcttccatgtcatata 5098721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 5427325 - 5427369
Alignment:
Q  385 tcctaaataataggatatatagctgccaagaataaactctgattt 429  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  5427325 tcctgaatgataggatatatggctgccaagaagaaactctgattt 5427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 47985298 - 47985223
Alignment:
Q  35 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 110  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  47985298 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47985223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 47994585 - 47994510
Alignment:
Q  35 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 110  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  47994585 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 48003872 - 48003797
Alignment:
Q  35 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 110  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  48003872 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48003797  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 48013157 - 48013082
Alignment:
Q  35 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 110  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  48013157 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48013082  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 47985151 - 47985060
Alignment:
Q  221 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 312  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47985151 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47985060  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 47994438 - 47994347
Alignment:
Q  221 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 312  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47994438 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47994347  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 48003725 - 48003634
Alignment:
Q  221 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 312  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48003725 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48003634  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 48013010 - 48012919
Alignment:
Q  221 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 312  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48013010 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48012919  T

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Target: scaffold1476 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 163 - 228
Alignment:
Q  80 agaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatt 145  Q
    |||||||||| |||||||| |||||||||||||||| ||||| | ||||| |||||||||||||||    
T  163 agaagaaaaaacgagtggagtgaatcaatgaaagatggtaaaacaatggcggagcaaaaatcaatt 228  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 22583280 - 22583209
Alignment:
Q  76 agaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggc--cgagcaaaaatcaatt 145  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||| | |||||   |||||||||||||||    
T  22583280 agaaagaagaaaaatcgagtggagtgaatcaatgaaagatggtaaaacaatggcggagagcaaaaatcaatt 22583209  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 7793 - 7741
Alignment:
Q  24 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaaca 76  Q
    |||||||||  ||| |||| |||||||||||||||| | ||||||||||||||    
T  7793 tgtcaagagtatctgtactcaagaggagcccactgaaggcttcaatcagaaca 7741  T

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