View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7944_high_3 (Length: 410)

Name: NF7944_high_3
Description: NF7944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7944_high_3
NF7944_high_3
[»] chr5 (19 HSPs)
chr5 (1-176)||(39350511-39350687)
chr5 (307-395)||(39350239-39350327)
chr5 (1-122)||(18654372-18654495)
chr5 (1-118)||(19229997-19230115)
chr5 (1-122)||(39164132-39164252)
chr5 (1-122)||(13278151-13278273)
chr5 (1-122)||(9083216-9083338)
chr5 (1-122)||(19228914-19229036)
chr5 (1-122)||(39349556-39349678)
chr5 (1-122)||(9082055-9082177)
chr5 (1-103)||(13276895-13276998)
chr5 (1-122)||(12372390-12372512)
chr5 (1-117)||(18655577-18655694)
chr5 (7-122)||(4031903-4032019)
chr5 (1-56)||(12373708-12373763)
chr5 (8-121)||(4032946-4033060)
chr5 (7-57)||(6803610-6803660)
chr5 (69-122)||(12373637-12373690)
chr5 (7-60)||(3944697-3944750)
[»] scaffold0141 (6 HSPs)
scaffold0141 (1-122)||(35205-35327)
scaffold0141 (1-122)||(31109-31231)
scaffold0141 (304-373)||(31473-31542)
scaffold0141 (304-373)||(34890-34959)
scaffold0141 (136-176)||(35131-35171)
scaffold0141 (136-175)||(31264-31303)
[»] scaffold0049 (6 HSPs)
scaffold0049 (1-122)||(79485-79607)
scaffold0049 (1-122)||(83581-83703)
scaffold0049 (304-373)||(79853-79922)
scaffold0049 (304-373)||(83270-83339)
scaffold0049 (136-176)||(79641-79681)
scaffold0049 (136-175)||(83509-83548)
[»] chr6 (14 HSPs)
chr6 (1-122)||(32713803-32713925)
chr6 (1-122)||(32712431-32712553)
chr6 (1-118)||(18572961-18573078)
chr6 (1-122)||(11801262-11801384)
chr6 (1-122)||(32348957-32349079)
chr6 (1-122)||(34996681-34996803)
chr6 (26-122)||(27719837-27719933)
chr6 (4-122)||(3000713-3000832)
chr6 (8-122)||(34995434-34995549)
chr6 (1-122)||(32347884-32348006)
chr6 (69-122)||(21094550-21094603)
chr6 (73-122)||(21095299-21095348)
chr6 (1-58)||(29479179-29479236)
chr6 (69-122)||(7628470-7628523)
[»] chr2 (7 HSPs)
chr2 (1-122)||(16602801-16602923)
chr2 (1-122)||(27892256-27892378)
chr2 (1-56)||(38243942-38243997)
chr2 (1-102)||(26388294-26388396)
chr2 (6-122)||(23833048-23833165)
chr2 (7-56)||(38242965-38243014)
chr2 (1-122)||(27891182-27891304)
[»] chr1 (23 HSPs)
chr1 (6-122)||(40187683-40187800)
chr1 (8-122)||(5488787-5488902)
chr1 (1-122)||(50484916-50485038)
chr1 (1-122)||(38235070-38235191)
chr1 (6-122)||(52761516-52761633)
chr1 (1-118)||(5488577-5488695)
chr1 (1-122)||(7111395-7111517)
chr1 (1-122)||(52086703-52086823)
chr1 (1-119)||(51468415-51468534)
chr1 (1-122)||(18819338-18819460)
chr1 (1-122)||(51693223-51693345)
chr1 (8-112)||(45228358-45228463)
chr1 (1-122)||(7110302-7110424)
chr1 (1-122)||(17244251-17244373)
chr1 (1-122)||(45229523-45229645)
chr1 (1-122)||(51468821-51468943)
chr1 (1-122)||(52087694-52087816)
chr1 (70-122)||(1823216-1823268)
chr1 (1-122)||(52759439-52759561)
chr1 (8-58)||(50483593-50483643)
chr1 (69-122)||(21203156-21203209)
chr1 (3-57)||(17245651-17245704)
chr1 (1-57)||(1821984-1822041)
[»] chr4 (24 HSPs)
chr4 (1-121)||(17356437-17356558)
chr4 (1-122)||(38031244-38031366)
chr4 (1-122)||(38032340-38032462)
chr4 (3-122)||(8814213-8814332)
chr4 (1-119)||(22621943-22622062)
chr4 (1-122)||(7261463-7261585)
chr4 (1-122)||(22623063-22623185)
chr4 (1-122)||(34095579-34095701)
chr4 (1-119)||(10802965-10803084)
chr4 (6-122)||(10804115-10804232)
chr4 (3-122)||(48499442-48499562)
chr4 (1-119)||(8815280-8815399)
chr4 (1-122)||(23757890-23758013)
chr4 (3-58)||(56233802-56233857)
chr4 (1-122)||(36074714-36074835)
chr4 (1-122)||(18091656-18091778)
chr4 (1-94)||(35193144-35193238)
chr4 (1-56)||(17357850-17357905)
chr4 (8-114)||(35191900-35192007)
chr4 (72-122)||(35927036-35927086)
chr4 (5-122)||(56234941-56235058)
chr4 (3-122)||(48501244-48501363)
chr4 (73-122)||(5433327-5433376)
chr4 (73-122)||(35925840-35925889)
[»] chr8 (17 HSPs)
chr8 (8-122)||(30640880-30640995)
chr8 (1-122)||(30644625-30644746)
chr8 (1-122)||(9244141-9244263)
chr8 (1-122)||(41636907-41637029)
chr8 (3-122)||(41638073-41638192)
chr8 (1-122)||(9245351-9245473)
chr8 (1-122)||(34642741-34642862)
chr8 (3-122)||(522017-522137)
chr8 (8-122)||(26364824-26364939)
chr8 (9-118)||(26366118-26366228)
chr8 (1-122)||(20309971-20310094)
chr8 (1-122)||(21096604-21096727)
chr8 (1-56)||(43584484-43584539)
chr8 (1-122)||(20308999-20309121)
chr8 (1-122)||(21095632-21095754)
chr8 (80-122)||(31203071-31203113)
chr8 (8-122)||(34643885-34643995)
[»] chr3 (51 HSPs)
chr3 (304-387)||(54354033-54354115)
chr3 (1-118)||(5689795-5689913)
chr3 (1-122)||(28777607-28777729)
chr3 (3-122)||(54353101-54353221)
chr3 (1-122)||(17742212-17742335)
chr3 (1-122)||(19043532-19043655)
chr3 (8-122)||(37610683-37610798)
chr3 (1-122)||(43393973-43394096)
chr3 (1-122)||(5691015-5691136)
chr3 (1-122)||(31937111-31937233)
chr3 (1-122)||(31938227-31938349)
chr3 (1-122)||(17116278-17116399)
chr3 (1-122)||(52522003-52522124)
chr3 (1-122)||(55209858-55209979)
chr3 (3-122)||(17740908-17741028)
chr3 (3-122)||(19042228-19042348)
chr3 (3-122)||(28776526-28776646)
chr3 (3-122)||(35758082-35758202)
chr3 (1-122)||(35759151-35759273)
chr3 (1-122)||(46903544-46903666)
chr3 (1-122)||(54354311-54354433)
chr3 (3-122)||(23073294-23073414)
chr3 (1-122)||(47431107-47431229)
chr3 (1-119)||(46902407-46902526)
chr3 (8-122)||(53180724-53180839)
chr3 (1-122)||(2232678-2232800)
chr3 (3-57)||(2233291-2233345)
chr3 (1-58)||(53765951-53766008)
chr3 (1-122)||(37609397-37609519)
chr3 (72-122)||(50879835-50879885)
chr3 (4-58)||(52525344-52525398)
chr3 (69-122)||(10979095-10979148)
chr3 (6-114)||(11348399-11348508)
chr3 (70-122)||(10978151-10978203)
chr3 (1-57)||(21729174-21729230)
chr3 (1-55)||(33113306-33113361)
chr3 (1-122)||(11346888-11347010)
chr3 (1-59)||(53178777-53178835)
chr3 (3-56)||(21727988-21728041)
chr3 (73-122)||(47429771-47429820)
chr3 (1-58)||(50881094-50881151)
chr3 (1-58)||(53764504-53764561)
chr3 (70-118)||(53764896-53764944)
chr3 (1-56)||(23091267-23091322)
chr3 (9-119)||(47917536-47917647)
chr3 (6-57)||(55210894-55210945)
chr3 (136-170)||(17742146-17742180)
chr3 (136-170)||(19043466-19043500)
chr3 (72-122)||(33111765-33111815)
chr3 (1-57)||(46986077-46986132)
chr3 (74-114)||(53765894-53765934)
[»] chr7 (38 HSPs)
chr7 (1-122)||(43113750-43113872)
chr7 (1-122)||(45399930-45400052)
chr7 (1-122)||(29186740-29186862)
chr7 (1-122)||(44230503-44230625)
chr7 (3-122)||(9392735-9392855)
chr7 (3-118)||(18787226-18787342)
chr7 (3-122)||(18788480-18788600)
chr7 (3-122)||(7011711-7011832)
chr7 (3-122)||(7027069-7027190)
chr7 (1-122)||(19217703-19217825)
chr7 (3-122)||(44748483-44748603)
chr7 (1-111)||(13750567-13750678)
chr7 (8-122)||(44746809-44746924)
chr7 (1-122)||(44417533-44417655)
chr7 (69-122)||(32518557-32518610)
chr7 (1-119)||(9391595-9391714)
chr7 (1-122)||(3537502-3537624)
chr7 (1-122)||(29187950-29188072)
chr7 (1-122)||(43961009-43961131)
chr7 (69-122)||(3538493-3538546)
chr7 (3-122)||(27072574-27072694)
chr7 (3-122)||(27205619-27205739)
chr7 (3-122)||(43962489-43962609)
chr7 (1-56)||(48793503-48793558)
chr7 (72-122)||(37237148-37237198)
chr7 (1-55)||(44420510-44420564)
chr7 (3-118)||(26005429-26005545)
chr7 (6-58)||(43115072-43115124)
chr7 (4-122)||(32519669-32519788)
chr7 (72-122)||(13597291-13597341)
chr7 (73-122)||(13599177-13599226)
chr7 (3-56)||(48792521-48792574)
chr7 (8-55)||(13599246-13599293)
chr7 (2-53)||(37235890-37235941)
chr7 (79-122)||(37235939-37235982)
chr7 (1-57)||(13597220-13597275)
chr7 (3-35)||(37235831-37235863)
chr7 (70-122)||(44420443-44420494)
[»] scaffold0878 (2 HSPs)
scaffold0878 (1-122)||(2946-3069)
scaffold0878 (3-122)||(1847-1966)
[»] scaffold0349 (1 HSPs)
scaffold0349 (26-122)||(9259-9355)
[»] scaffold1425 (3 HSPs)
scaffold1425 (1-122)||(210-332)
scaffold1425 (1-122)||(1521-1643)
scaffold1425 (136-170)||(367-401)
[»] scaffold0018 (2 HSPs)
scaffold0018 (1-56)||(25332-25387)
scaffold0018 (73-122)||(25264-25313)
[»] scaffold0026 (1 HSPs)
scaffold0026 (78-122)||(104405-104449)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 39350687 - 39350511
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |         |||||||||||||||||||||||||| ||||    
T  39350687 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcctctaaaaaaagagaccgttggattacggaggtctatcagattt 39350588  T
Q  100 tacagtgtatcaccaacacctaannnnnnngctttattcatcttctttcaaccttcatcatgccataaaaaatctaa 176  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  39350587 tacagtgtatcaccaacacctaatttttttgctttattcatcttctttcaaccttcatcatgccataaaaaatctaa 39350511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 39350327 - 39350239
Alignment:
Q  307 taatatcatcatactcataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattctcattccaattctcagtcccata 395  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39350327 taatatcatcatacccataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattctcattccaattctcactcccata 39350239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18654372 - 18654495
Alignment:
Q  1 acgtcccttaacttatttcttttacttaa-tttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||||||||| | || |||||||||||||| || |||||||||||||         |||||||||||||||||||||||||| |||    
T  18654372 acgtcccttaacttatttcttttattaaaatttggtccaattttgatcattttaatcccattaaaaaagagaccgttggattacggaggtctatcagatt 18654471  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||||||||||||    
T  18654472 ttacagtgtatcaccaacacctaa 18654495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 19230115 - 19229997
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||||||||    
T  19230115 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattt 19230016  T
Q  100 tacagtgtatcaccaacac 118  Q
    || ||||||||| ||||||    
T  19230015 tatagtgtatcatcaacac 19229997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39164132 - 39164252
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||||||||||||||||||| | |||||||||||||||| || ||||||||||| |        ||| |||| |||||||||| ||||||||||||    
T  39164132 acgtcccttaacttatttcttttattcaatttggtccaattttgat-attttaatcccttaaaaaaaagactgttgaattacggaggcctatcaaatttt 39164230  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||||||||||||||||||||    
T  39164231 atagtgtatcaccaacacctaa 39164252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13278273 - 13278151
Alignment:
Q  1 acgtcccttaacttatttcttttactt-aatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||         ||||||||||||| |||||||||||| |||    
T  13278273 acgtcccttaacttattt-ttttacttcaatttgatccaattttgataattttaatcccatagaaaaagagaccgttggattagggaggtctatcagatt 13278175  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    ||| ||||||||||||||||||||    
T  13278174 ttatagtgtatcaccaacacctaa 13278151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9083338 - 9083216
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||| ||| ||||| | |||||||||||||||| |||||||||||||| |         ||||||||||||||| |||||||| | ||||    
T  9083338 acgtcccttaacttttttattttattcaatttggtccaattttgataattttaatcccctaaaaaaggagaccgttggattacgaaggtctataagattt 9083239  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  9083238 tatagtgtatcaccaacacctaa 9083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19228914 - 19229036
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||| |||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||| | ||||    
T  19228914 acgttccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctattagattt 19229013  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  19229014 tatagtgtatcatcaacacctaa 19229036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39349556 - 39349678
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |         ||||||| |||||||||||||||| | ||||    
T  39349556 acgtcctttaacttatttcttttactcaatttggttcaatttttataattttaatcccctaaaaaaagtgaccgtttgattacggaggtctattagattt 39349655  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    ||  ||| |||||||||||||||    
T  39349656 tatcgtggatcaccaacacctaa 39349678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9082055 - 9082177
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         ||||||||||| ||||| |||||||| ||||    
T  9082055 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctagaaaatgagaccgttggatcacggatgtctatcagattt 9082154  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||| |||| | |||||||||    
T  9082155 tatagtatatcgctaacacctaa 9082177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13276895 - 13276998
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||| |         |||||||||||||||||||| ||||| ||||    
T  13276895 acgtcccttaacttatttcttttattcaatttggtcaaattttgataattttaatcccttaaaaaaaaagaccgttggattacggaggtgtatcacattt 13276994  T
Q  100 taca 103  Q
    ||||    
T  13276995 taca 13276998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12372390 - 12372512
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnng-accgttggattacggaggtctatcaaattt 99  Q
    ||||| |||||||||||| ||||| | |||||| ||||||||| ||||||||||| || |          |||||||||||||| |||||||||| ||||    
T  12372390 acgtctcttaacttatttgttttattcaatttgatccaattttgataattttaataccctaaaaaaacataccgttggattacgaaggtctatcagattt 12372489  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  12372490 tatagtgtatcaccaacacctaa 12372512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 18655694 - 18655577
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||||||||| | |||||||||||| ||| |||||||||||||| |         |||||||| |||||| | |||||||| ||||    
T  18655694 acgtcccttaatttatttcttttattcaatttggtccaactttgataattttaatcccctaaaaaaagagaccgttgaattacgaaagtctatcagattt 18655595  T
Q  100 tacagtgtatcaccaaca 117  Q
    ||| ||||||||||||||    
T  18655594 tacggtgtatcaccaaca 18655577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 4031903 - 4032019
Alignment:
Q  7 cttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaattttacagt 105  Q
    |||||||||||||||||| | ||||| |||||||||| ||||||||||||| |          |||||||| |||||||| ||||| || |||||| |||    
T  4031903 cttaacttatttcttttattcaatttagtccaattttgataattttaatccactaaaaaaagagaccgttgaattacggaagtctaccagattttatagt 4032002  T
Q  106 gtatcaccaacacctaa 122  Q
    |||||||||||||||||    
T  4032003 gtatcaccaacacctaa 4032019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12373763 - 12373708
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||    
T  12373763 acgtcccttaacttatttattttattcaatttggtccaattttgataattttaatc 12373708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 4033060 - 4032946
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||| ||||| |||| ||||||||||||| ||||||||||||| |          |||||||||||||||||||||||||| |||||| | ||    
T  4033060 ttaacttattttttttatttaacttggtccaattttaataattttaatccactaaaaaaagagaccgttggattacggaggtctatcagattttataatg 4032961  T
Q  107 tatcaccaacaccta 121  Q
    |||||  ||||||||    
T  4032960 tatcattaacaccta 4032946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 6803660 - 6803610
Alignment:
Q  7 cttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  6803660 cttaacttatttcttttattcaatttggtccaattttgataattttaatcc 6803610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 12373690 - 12373637
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||| | |||||||| |||||||| ||||||||||||||||||    
T  12373690 gaccgttggattacgaatgtctatcagattttacactgtatcaccaacacctaa 12373637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 3944750 - 3944697
Alignment:
Q  7 cttaacttatttcttttacttaatttggtccaatttttataattttaatcccat 60  Q
    |||||||||||  ||||| |||||||| ||||||||| ||||||||||| ||||    
T  3944750 cttaacttattatttttatttaatttgatccaattttaataattttaataccat 3944697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 35327 - 35205
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  35327 acgtccctcaacttatttcttttactcaatttggtccaatttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattt 35228  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  35227 tacagtgtatcaccaacacctaa 35205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31109 - 31231
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  31109 acgtccctcaacttatttcttttactcaatttggtccagtttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattt 31208  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  31209 tatagtgtatcaccaacacctaa 31231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 31473 - 31542
Alignment:
Q  304 acctaatatcatcatactcataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattct 373  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31473 acctaatatcatcatacccataaatctttgaaactcctcaaaaccatttccttcaaaaccgaattattct 31542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 34959 - 34890
Alignment:
Q  304 acctaatatcatcatactcataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattct 373  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34959 acctaatatcatcatacccataaatctttgaaactcctcaaaaccatttccttcaaaaccgaattattct 34890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 35171 - 35131
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaaatctaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35171 ttcatcttctttcaaccttcatcatgccataaaaaatctaa 35131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 31264 - 31303
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaaatcta 175  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31264 ttcatcttctttcaaccttcatcatgccataaaaaatcta 31303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 79485 - 79607
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  79485 acgtccctcaacttatttcttttactcaatttggtccaatttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattt 79584  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  79585 tacagtgtatcaccaacacctaa 79607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 83703 - 83581
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  83703 acgtccctcaacttatttcttttactcaatttggtccagtttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattt 83604  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  83603 tatagtgtatcaccaacacctaa 83581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 79853 - 79922
Alignment:
Q  304 acctaatatcatcatactcataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattct 373  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  79853 acctaatatcatcatacccataaatctttgaaactcctcaaaaccatttccttcaaaaccgaattattct 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 83339 - 83270
Alignment:
Q  304 acctaatatcatcatactcataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattct 373  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  83339 acctaatatcatcatacccataaatctttgaaactcctcaaaaccatttccttcaaaaccgaattattct 83270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 79641 - 79681
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaaatctaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  79641 ttcatcttctttcaaccttcatcatgccataaaaaatctaa 79681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 83548 - 83509
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaaatcta 175  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  83548 ttcatcttctttcaaccttcatcatgccataaaaaatcta 83509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32713925 - 32713803
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||| | ||||    
T  32713925 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagtgaccgttggattacggaggtctataagattt 32713826  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  32713825 tacagtgtatcaccaacacctaa 32713803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 32712431 - 32712553
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||||||||    
T  32712431 acgtctcttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattt 32712530  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || |||||| |||||||||||||    
T  32712531 tatagtgtaccaccaacacctaa 32712553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18572961 - 18573078
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||||||||||||||||||| | || |||| |||||||| |||||||||||||| |         || ||||||||||||||||||||||||||||    
T  18572961 acgtcccttaacttatttcttttattcaaattgggccaattttgataattttaatcccctaaaaaagacactgttggattacggaggtctatcaaatttt 18573060  T
Q  101 acagtgtatcaccaacac 118  Q
    ||||||||||||||||||    
T  18573061 acagtgtatcaccaacac 18573078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11801384 - 11801262
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||||||||    
T  11801384 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattt 11801285  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || |||||||||  |||||||||    
T  11801284 tatagtgtatcattaacacctaa 11801262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32349079 - 32348957
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  32349079 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 32348980  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  32348979 tatagtgtatcatcaacacctaa 32348957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34996803 - 34996681
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc-ccatnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||          ||||||||||||||| |||||||||| ||||    
T  34996803 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatctcctaaaaaaacagaccgttggattacgaaggtctatcagattt 34996704  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  34996703 tatagtgtatcaccaacacctaa 34996681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 27719837 - 27719933
Alignment:
Q  26 ttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||| ||||||||| || ||||||||||| |        |||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  27719837 ttaatttgatccaattttgatgattttaatcccctaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaa 27719933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 3000832 - 3000713
Alignment:
Q  4 tcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttac 102  Q
    ||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| |         || |||||||||||| |||||||||| ||||||     
T  3000832 tcccttaacttatttcttttattcaatttagtccaattttgataattttaatcccctaaaaacacagatcgttggattacgaaggtctatcagattttat 3000733  T
Q  103 agtgtatcaccaacacctaa 122  Q
    |||||||||| |||||||||    
T  3000732 agtgtatcactaacacctaa 3000713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 34995434 - 34995549
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||| |         ||||||| ||||||| |||||||||| |||||| ||||    
T  34995434 ttaacttatttcttttattcaatttggtccaattttaataattttaatcccctaaaaaaacagaccgttagattacgaaggtctatcagattttatagtg 34995533  T
Q  107 tatcaccaacacctaa 122  Q
    ||||||||||| ||||    
T  34995534 tatcaccaacatctaa 34995549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 32347884 - 32348006
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| | |||||||||| | |||||||||||||||| |||||||||||||| |         || ||||||||||||| ||||||||| ||||    
T  32347884 acgtcccttaagtgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaacgttggattacgggggtctatcagattt 32347983  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  32347984 tatagtgtatcatcaacacctaa 32348006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 21094550 - 21094603
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||||||||||    
T  21094550 gaccgttggattacggaggtctactagattttatagtgtatcaccaacacctaa 21094603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 21095348 - 21095299
Alignment:
Q  73 gttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||||||    
T  21095348 gttggattacggaggtctaccagattttatagtgtatcaccaacacctaa 21095299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29479236 - 29479179
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    |||||| ||||||||||||||||| | |||||||||||||||| ||||||| ||||||    
T  29479236 acgtcctttaacttatttcttttattcaatttggtccaattttaataatttcaatccc 29479179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 7628470 - 7628523
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||| ||||| |||| |||| || |||| ||||||||||||||||||||||    
T  7628470 gaccgttagattatggagatctaccagatttcacagtgtatcaccaacacctaa 7628523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 16602801 - 16602923
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc-atnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |         ||||||||||||||||| |||||||| ||||    
T  16602801 acgtcccttaacttatttcttttatttaaattggtccaattttgataattttaatccctaaaaaaaaaagaccgttggattacggatgtctatcagattt 16602900  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  16602901 tacagtgtatcaccaacacctaa 16602923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27892378 - 27892256
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc-ccatnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||   |         ||||||| ||||||| |||||||||| ||||    
T  27892378 acgtcccttaacttatttcttttattcaatttgatccaattttgataattttaatcaaaaaaaaaaacagaccgttagattacgaaggtctatcagattt 27892279  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  27892278 tatagtgtatcaccaacacctaa 27892256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38243997 - 38243942
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  38243997 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatc 38243942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 26388294 - 26388396
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||| |||||||| | ||||||| ||||||||||||||||         ||||||| |||||||||||||||||| ||||    
T  26388294 acgtcctttaacttatttcttttatttaatttgattcaattttgataattttaatcccatataaaaaaagaccgtttgattacggaggtctatcagattt 26388393  T
Q  100 tac 102  Q
    |||    
T  26388394 tac 26388396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 23833048 - 23833165
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacag 104  Q
    ||||||||| ||| ||||| | ||||| |||||||||| |||||||||||||| |         |||||||||||||||||||||||  | |||||| ||    
T  23833048 ccttaacttttttattttattcaatttagtccaattttgataattttaatcccctaaaaaagaagaccgttggattacggaggtctagaagattttatag 23833147  T
Q  105 tgtatcaccaacacctaa 122  Q
    ||||||| ||||||||||    
T  23833148 tgtatcatcaacacctaa 23833165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 38242965 - 38243014
Alignment:
Q  7 cttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  38242965 cttaacttatttcttttatttaatttgatccaattttgataattttaatc 38243014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27891182 - 27891304
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | | |||||| ||||||| |||||||||||   |          ||||||| ||||||| | |||||||| ||||    
T  27891182 acgtcccttaacttatttcttttattcattttggttcaattttgataattttaataaaaaaaaaaaacagaccgttagattacgaatgtctatcagattt 27891281  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    | |||||||||||||||||||||    
T  27891282 tccagtgtatcaccaacacctaa 27891304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 40187683 - 40187800
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttacag 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||| ||||||  |    
T  40187683 ccttaacttatttcttttactcaatttggtccaatttttataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatcg 40187782  T
Q  105 tgtatcaccaacacctaa 122  Q
    ||||||||||||||||||    
T  40187783 tgtatcaccaacacctaa 40187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 5488902 - 5488787
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||| |         ||||||||||||||||||||||||||||||||| ||||    
T  5488902 ttaacttatttcttttattcaatttggtccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcaaattttatagtg 5488803  T
Q  107 tatcaccaacacctaa 122  Q
    ||||||||||||||||    
T  5488802 tatcaccaacacctaa 5488787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 50485038 - 50484916
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||| |||||||||  |||||||||| ||||    
T  50485038 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccattggattacataggtctatcagattt 50484939  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  50484938 tacagtgtatcaccaacacctaa 50484916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 38235191 - 38235070
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||          |||||||||||||| | |||||| | |||||    
T  38235191 acgtcccttaacttatttcttttattaaatttggtccaattttaataagtttaatcccaaaaaaaacaaaccgttggattacgaatgtctataagatttt 38235092  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    ||||||||||||||||||||||    
T  38235091 acagtgtatcaccaacacctaa 38235070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 52761633 - 52761516
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacag 104  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||| ||||||||||||| |||||| ||    
T  52761633 ccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctgaaaaaagagaccgttggattgcggaggtctatcagattttatag 52761534  T
Q  105 tgtatcaccaacacctaa 122  Q
    ||||||||||||||||||    
T  52761533 tgtatcaccaacacctaa 52761516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5488577 - 5488695
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||| | |||||| ||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  5488577 acgtcctttaacttatttcttttattcaatttgatccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcagattt 5488676  T
Q  100 tacagtgtatcaccaacac 118  Q
    || ||||||||||||||||    
T  5488677 tatagtgtatcaccaacac 5488695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7111517 - 7111395
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| |||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  7111517 acgtccattaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 7111418  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  7111417 tatagtgtatcatcaacacctaa 7111395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 52086703 - 52086823
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| |         |||||||||||||| |||||||| |||||||    
T  52086703 acgtcccttaacttatttcttttattcaatttagtccaattttaataattttaatcccctaaaaaaaa-accgttggattacgaaggtctataaaatttt 52086801  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | |||||||||||| |||||||    
T  52086802 atagtgtatcaccatcacctaa 52086823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 51468415 - 51468534
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         ||  | |||||||||||||||||||| ||||    
T  51468415 acgtcccttaacttatttcttttattcaatttggtccaattttaataattttaatcccctaaaaaaaaagattgatggattacggaggtctatcagattt 51468514  T
Q  100 tacagtgtatcaccaacacc 119  Q
    || |||||||||||||||||    
T  51468515 tatagtgtatcaccaacacc 51468534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18819338 - 18819460
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnnga-ccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||||||||| | ||||||| |||||||| |||||||||||||| |         | |||||||||||||||||| ||||| ||||    
T  18819338 acgtcccttaatttatttcttttattcaatttggcccaattttaataattttaatcccctatgaaaagaaaccgttggattacggaggtatatcagattt 18819437  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  18819438 tatagtgtatcaccaacacctaa 18819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 51693223 - 51693345
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||| | |||||||| ||||||| ||||||||||| || |         |||||||||||||||||||||||||  ||||    
T  51693223 acgtcctttaacttatttcttttattcaatttggttcaattttgataattttaataccctaaaaaaagagaccgttggattacggaggtctatcggattt 51693322  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  51693323 tatagtgtatcaccaacacctaa 51693345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 45228358 - 45228463
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||| |||||||||||||| ||||    
T  45228358 ttaacttatttcttttattcaatttggtccaattttaataattttaatcccctaaaaaaagagaccgttggattacggagatctatcaaattttatagtg 45228457  T
Q  107 tatcac 112  Q
    ||||||    
T  45228458 tatcac 45228463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7110302 - 7110424
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         || ||||||||| ||||||||||||| ||||    
T  7110302 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagatcgttggattgcggaggtctatcagattt 7110401  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| |||| |||||    
T  7110402 tatagtgtatcatcaacgcctaa 7110424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17244251 - 17244373
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc-ccatnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||| | | |||||||||||||||| |||||||||||| ||          |||||||||||||||||||||||||| ||||    
T  17244251 acgtcccttaacttatttctttgattcaatttggtccaattttgataattttaatctcctaaaaaaagagaccgttggattacggaggtctatcagattt 17244350  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || | ||||||||| | ||||||    
T  17244351 tataatgtatcaccgatacctaa 17244373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 45229645 - 45229523
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||| ||         ||  |||||||||||||||||||||| ||||    
T  45229645 acgtcccttaacttatttcttttattcaatttgatccaattttgataattttaatcctataaaaaaaaagattgttggattacggaggtctatcagattt 45229546  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || | || |||||||||||||||    
T  45229545 tataatggatcaccaacacctaa 45229523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 51468943 - 51468821
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||| |||||||||||| || | |||||||||||||||| |||||||||||||| |          | | ||||||||||||| ||||| | ||||    
T  51468943 acgtccctaaacttatttcttctattcaatttggtccaattttaataattttaatcccctaaaaaaaaaaagcattggattacggagatctattagattt 51468844  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  51468843 tacagtgtatcaccaacacctaa 51468821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 52087816 - 52087694
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| || |||||||||||||| | |||||| | ||||||| ||||||||| |||| |         |||||||| ||||||||||||||||||||||    
T  52087816 acgtcctttcacttatttcttttattcaatttgattcaattttgataattttagtcccctaaaaaaagagaccgttgaattacggaggtctatcaaattt 52087717  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    ||| |||||||||||||| ||||    
T  52087716 tacggtgtatcaccaacatctaa 52087694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 1823268 - 1823216
Alignment:
Q  70 accgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  1823268 accgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaa 1823216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 52759439 - 52759561
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||| | ||||| | ||||| |||||||||| |||||||||||| | |         |||||||| ||||| ||||||||||| ||||    
T  52759439 acgtccattaacttatctattttattcaatttagtccaattttgataattttaatctcttaaaaaatgagaccgttgaattacagaggtctatcagattt 52759538  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  52759539 tatagtgtatcaccaacacctaa 52759561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 50483593 - 50483643
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    |||| |||||||||||| | |||||||||||||||||||||||||| ||||    
T  50483593 ttaatttatttcttttattcaatttggtccaatttttataattttactccc 50483643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 21203156 - 21203209
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||  |||||||||| |||||| ||||||||| ||||||||||    
T  21203156 gaccgttggattacaaaggtctatcagattttatagtgtatcatcaacacctaa 21203209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 17245704 - 17245651
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    |||||||||||||||| ||||| | |||||||||||||||| || ||||||||||    
T  17245704 gtcccttaacttattt-ttttattaaatttggtccaattttgatcattttaatcc 17245651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1821984 - 1822041
Alignment:
Q  1 acgtcccttaacttatttctttt-acttaatttggtccaatttttataattttaatcc 57  Q
    |||||||||||||||||| |||| | ||||||| ||| |||||| |||||||||||||    
T  1821984 acgtcccttaacttatttttttttatttaatttagtctaattttgataattttaatcc 1822041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 17356437 - 17356558
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  17356437 acgtcccttaacttatttcttttattcaatttgttccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 17356536  T
Q  100 tacagtgtatcaccaacaccta 121  Q
    || |||||||||||||||||||    
T  17356537 tatagtgtatcaccaacaccta 17356558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38031244 - 38031366
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||         |||||||| ||||||||||||||||| ||||    
T  38031244 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccataaaaaaaaagaccgttgaattacggaggtctatcagattt 38031343  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  38031344 tatagtgtatcatcaacacctaa 38031366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 38032462 - 38032340
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  38032462 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 38032363  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  38032362 tatagtgtatcatcaacacctaa 38032340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 8814213 - 8814332
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattttac 102  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||| || |        ||| |||||||||||||||||||||| ||||||     
T  8814213 gtcccttaacttatttcttttattcaatttggtcgaattttgataattttaataccctaaaaaatagactgttggattacggaggtctatcagattttat 8814312  T
Q  103 agtgtatcaccaacacctaa 122  Q
    |||||| |||||||||||||    
T  8814313 agtgtaacaccaacacctaa 8814332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22621943 - 22622062
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  22621943 acgtccctttacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 22622042  T
Q  100 tacagtgtatcaccaacacc 119  Q
    || ||||||||||| |||||    
T  22622043 tatagtgtatcaccgacacc 22622062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7261585 - 7261463
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||| |||||||||| |||||||| | ||||    
T  7261585 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaatagaccattggattacgaaggtctataagattt 7261486  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  7261485 tatagtgtatcaccaacacctaa 7261463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22623185 - 22623063
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  22623185 acgtccctttacttatttcttttattcaatttggtccaattttgataattttaatcccctacaaaaagagaccgttggattacggaggtctatcagattt 22623086  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || | ||||||||||||| ||||    
T  22623085 tataatgtatcaccaacatctaa 22623063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34095701 - 34095579
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||  | |||||||||||||||| |||||||||||||| |         |||||||| ||||||||||||||||| ||||    
T  34095701 acgtcccttaacttatttcttttgttcaatttggtccaattttgataattttaatcccctaaaaaaggagaccgttgaattacggaggtctatcagattt 34095602  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||| ||||||||    
T  34095601 tatagtgtatcacccacacctaa 34095579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10802965 - 10803084
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaat-cccatnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||||||||| |||          |||||||||||||||||||| ||||| ||||    
T  10802965 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaataccctaaaaaaagagaccgttggattacggaggtttatcagattt 10803064  T
Q  100 tacagtgtatcaccaacacc 119  Q
    || | |||||||||||||||    
T  10803065 tatattgtatcaccaacacc 10803084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 10804232 - 10804115
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacag 104  Q
    ||||||||||||||||||| | |||||||| ||||||| |||||||||||||  |         |||||||||||||||||||||||||| |||||||||    
T  10804232 ccttaacttatttcttttattcaatttggttcaattttgataattttaatccactaaaaaaaaagaccgttggattacggaggtctatcagattttacag 10804133  T
Q  105 tgtatcaccaacacctaa 122  Q
    ||||||| |||| |||||    
T  10804132 tgtatcatcaacgcctaa 10804115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 48499442 - 48499562
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||| ||||| | |||||||||||||||| |||||||||||||| |         || ||||||||||| ||||||||||| ||||||    
T  48499442 gtcccttaacttatttattttattcaatttggtccaattttgataattttaatcccctaaaaaaagagatcgttggattacagaggtctatcagatttta 48499541  T
Q  102 cagtgtatcaccaacacctaa 122  Q
    | |||||||||||||| ||||    
T  48499542 cggtgtatcaccaacatctaa 48499562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 8815399 - 8815280
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnnga-ccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||||||||||| || | || ||||||||||||| |||||||||||||  |         | |||||||||||||||||||||||| ||||    
T  8815399 acgtcccttaacttatttcttctattcaaattggtccaattttgataattttaatcctctaaaaaaaaaaaccgttggattacggaggtctatcagattt 8815300  T
Q  100 tacagtgtatcaccaacacc 119  Q
    || |||||||||||||||||    
T  8815299 tatagtgtatcaccaacacc 8815280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 23758013 - 23757890
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttgg-tccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||||||||| | ||||| | ||||||||| ||||||||||||| |          |||||||| ||||||||||||||||| |||    
T  23758013 acgtcccttaacttatttcttttattaaattttgatccaattttgataattttaatcctccaaaaaaagagaccgttgaattacggaggtctatcagatt 23757914  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    |||  |||||||||||||||||||    
T  23757913 ttatggtgtatcaccaacacctaa 23757890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 56233802 - 56233857
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  56233802 gtcccttaacttatttcttttattcaatttggtccaattttgataattttaatccc 56233857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 36074835 - 36074714
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaattttt-ataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||| ||||||||||||| ||||| | ||||||||| ||||||| ||| |||||||| |||        || |||||||||||| |||||||||| ||||    
T  36074835 acgttccttaacttattttttttattcaatttggtctaattttttatatttttaatctcataaaaaaa-gatcgttggattacgaaggtctatcatattt 36074737  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  36074736 tatagtgtatcaccaacacctaa 36074714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18091656 - 18091778
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||| | ||||| | ||||| |||||||||| |||||||||||| | |         |||||||| ||||| ||||||||||| ||||    
T  18091656 acgtccattaacttatctattttattcaatttagtccaattttgataattttaatctcttaaaaaatgagaccgttgaattacagaggtctatcagattt 18091755  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  18091756 tatagtgtatcaccaacacctaa 18091778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 35193238 - 35193144
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatca 94  Q
    |||||| ||||||||||||||||| | ||||||||||| |||| |||||||||||||| |         ||||||||||||||||||||||||||    
T  35193238 acgtcctttaacttatttcttttattcaatttggtccatttttgataattttaatcccctagaaaaagagaccgttggattacggaggtctatca 35193144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17357905 - 17357850
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||||||||| | ||| || ||||||||| ||||||||||||    
T  17357905 acgtcccttaacttatttcttttattcaatatgatccaattttgataattttaatc 17357850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 35191900 - 35192007
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | ||||| || ||||||| |||||||||||||| |         || |||||||||||||| ||||||||||||||| ||||    
T  35191900 ttaacttatttcttttattcaatttagttcaattttgataattttaatcccctaaaaaaagagaacgttggattacggaagtctatcaaattttatagtg 35191999  T
Q  107 tatcacca 114  Q
    || |||||    
T  35192000 taccacca 35192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 35927086 - 35927036
Alignment:
Q  72 cgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||| ||||||| || |||||| ||||||||||||||||||||    
T  35927086 cgttggattacgaaggtctaccagattttatagtgtatcaccaacacctaa 35927036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 56235058 - 56234941
Alignment:
Q  5 cccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattttacag 104  Q
    |||||||||||||||||||| | |||| |||| |||||| ||| |||||||||  |        ||||  || |||||| |||||||||| |||||| |     
T  56235058 cccttaacttatttcttttattcaattcggtctaattttgatacttttaatcctctaaaaaacagaccaatgaattacgaaggtctatcagattttataa 56234959  T
Q  105 tgtatcaccaacacctaa 122  Q
    ||||||||||||||||||    
T  56234958 tgtatcaccaacacctaa 56234941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 48501363 - 48501244
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatttta 101  Q
    |||| ||||||||||||||||| | ||||||||| |||||| ||| |||||||||| |         ||||||| |||||||||||||| ||| ||||||    
T  48501363 gtcctttaacttatttcttttattcaatttggtctaattttaata-ttttaatcccctaaaaaaagagaccgttagattacggaggtctgtcagatttta 48501265  T
Q  102 cagtgtatcaccaacacctaa 122  Q
      |||||||| ||||||||||    
T  48501264 ttgtgtatcatcaacacctaa 48501244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 5433376 - 5433327
Alignment:
Q  73 gttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||| ||||||||||||||||| |||||| | |||||||| |||||||||    
T  5433376 gttgtattacggaggtctatcagattttataatgtatcacaaacacctaa 5433327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 35925840 - 35925889
Alignment:
Q  73 gttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||| ||||||| |||||| ||||||||  ||||||||||    
T  35925840 gttggattacggagatctatcagattttatagtgtatcgtcaacacctaa 35925889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 30640880 - 30640995
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | |||||| ||||||||| |||||||||||||| |         ||||||||||||||||||||||||||||||||| ||||    
T  30640880 ttaacttatttcttttattcaatttgatccaattttaataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattttatagtg 30640979  T
Q  107 tatcaccaacacctaa 122  Q
    ||||||||||||||||    
T  30640980 tatcaccaacacctaa 30640995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30644746 - 30644625
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    ||||| |||||||||||||||||| | |||||| ||||||||| |||||||||||||  |        ||||||||||||||||||||||||||||||||    
T  30644746 acgtctcttaacttatttcttttattcaatttgatccaattttgataattttaatcctctaaaaaagagaccgttggattacggaggtctatcaaatttt 30644647  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | | || |||||||||||||||    
T  30644646 ataatggatcaccaacacctaa 30644625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9244141 - 9244263
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||| ||||| | |||||||| ||||||| |||||||||||||| |         |||||| ||||||||||||||||||| ||||    
T  9244141 acgtcccttaacttatttattttattcaatttggttcaattttgataattttaatcccttaaaaaatgagaccgtaggattacggaggtctatcagattt 9244240  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  9244241 tatagtgtatcaccaacacctaa 9244263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41636907 - 41637029
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||| |         ||||||||||||||||| |||||||| ||||    
T  41636907 acgtcccttaatttatttcttttattcaatttggtccaacttttataattttaatcccctaaaaaaagagaccgttggattacggaagtctatcagattt 41637006  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    ||  |||||||||||||||||||    
T  41637007 tatcgtgtatcaccaacacctaa 41637029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 41638192 - 41638073
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattttac 102  Q
    |||| ||||||||||||||||| | |||||||||||||||| |||||||||||||| |        |||  ||||||||| |||||||||||  |||||     
T  41638192 gtcctttaacttatttcttttattcaatttggtccaattttaataattttaatcccctaaaaaagagacaattggattacagaggtctatcatgttttat 41638093  T
Q  103 agtgtatcaccaacacctaa 122  Q
    ||||||||||||||||||||    
T  41638092 agtgtatcaccaacacctaa 41638073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9245473 - 9245351
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||| ||||| | ||||| ||||||||||||||||||||||||| |         |||||||||||| | ||||||||||| ||||    
T  9245473 acgtcccttaatttatttattttattcaatttagtccaatttttataattttaatcccctaaaaaaagagaccgttggattgctgaggtctatcagattt 9245374  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  9245373 tatagtgtatcaccaacacctaa 9245351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34642741 - 34642862
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||||||||||||||||||| | ||||||||  |||||| |||||||||||||| |         ||||||||||| ||||||||||||| |||||    
T  34642741 acgtcccttaacttatttcttttattcaatttggtttaattttgataattttaatcccctaaaaaaaaaaccgttggattgcggaggtctatcagatttt 34642840  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||| ||||||||||| ||||    
T  34642841 atagtatatcaccaacatctaa 34642862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 522137 - 522017
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||| ||||| | |||||| || |||||| |||||||||||||| |         ||| |||||||||||||||||||||||||||||    
T  522137 gtcccttaacttatttattttattcaatttgatctaattttgataattttaatcccctagaaaaagagactgttggattacggaggtctatcaaatttta 522038  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     |||||||||||||| |||||    
T  522037 tagtgtatcaccaacccctaa 522017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 26364824 - 26364939
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | |||||| ||||||||| |||||||||||||  |         |||||||||||||| ||||||||||| |||||| | ||    
T  26364824 ttaacttatttcttttattcaatttgatccaattttgataattttaatcctctaaaaaaagagaccgttggattacagaggtctatcagattttataatg 26364923  T
Q  107 tatcaccaacacctaa 122  Q
    ||||||||||||||||    
T  26364924 tatcaccaacacctaa 26364939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 26366228 - 26366118
Alignment:
Q  9 taacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtgt 107  Q
    |||||||||||||||| | ||||||||||| |||| |||||||||||||| |         ||||||| |||||||||||||||| | |||||| |||||    
T  26366228 taacttatttcttttattcaatttggtccatttttaataattttaatcccctaaaaaaaaagaccgttagattacggaggtctattagattttatagtgt 26366129  T
Q  108 atcaccaacac 118  Q
    |||||||||||    
T  26366128 atcaccaacac 26366118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20310094 - 20309971
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc--atnnnnnnnngaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||||||||| |  ||||||| ||||||| ||||||||||||||  |         ||||||||||||| | |||||| ||| |||    
T  20310094 acgtcccttaacttatttcttttattcgatttggttcaattttgataattttaatcccttagaaaaaaaagaccgttggattatgaaggtctgtcagatt 20309995  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    ||| ||||||||||| ||||||||    
T  20309994 ttatagtgtatcacctacacctaa 20309971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21096727 - 21096604
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc--atnnnnnnnngaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||||||||| |  ||||||| ||||||| ||||||||||||||  |         ||||||||||||| | |||||| ||| |||    
T  21096727 acgtcccttaacttatttcttttattcgatttggttcaattttgataattttaatcccttagaaaaaaaagaccgttggattatgaaggtctgtcagatt 21096628  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    ||| ||||||||||| ||||||||    
T  21096627 ttatagtgtatcacctacacctaa 21096604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43584484 - 43584539
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  43584484 acgtcccttaacttatttcttttattcaatttgatccaattttgataattttaatc 43584539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20308999 - 20309121
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||  ||||| | |||||||||||||||| |||||||| ||||| |         ||||||||||| || ||||||||||| ||||    
T  20308999 acgtcccttaatttattgtttttattcaatttggtccaattttgataattttgatcccctagaaaaagagaccgttggatcactgaggtctatcagattt 20309098  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||| ||||||    
T  20309099 tatagtgtatcaccaatacctaa 20309121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 21095632 - 21095754
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||  ||||| | |||||||||||||||| |||||||| ||||| |         ||||||||||| || ||||||||||| ||||    
T  21095632 acgtcccttaatttattgtttttattcaatttggtccaattttgataattttgatcccctagaaaaagagaccgttggatcactgaggtctatcagattt 21095731  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||| ||||||    
T  21095732 tatagtgtatcaccaatacctaa 21095754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 31203071 - 31203113
Alignment:
Q  80 tacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  31203071 tacggaggtctatcaaattttataatgtatcaccaacacctaa 31203113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 34643995 - 34643885
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattttacagtgt 107  Q
    |||| |||||||||||| ||||||| || ||||||| |||||||||||||| |        ||||||||||||   ||||||||||| ||||||  | ||    
T  34643995 ttaatttatttcttttatttaatttagttcaattttgataattttaatcccct-aaaaaaagaccgttggatt---gaggtctatcagattttatggcgt 34643900  T
Q  108 atcaccaacacctaa 122  Q
    |||||||||||||||    
T  34643899 atcaccaacacctaa 34643885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 51)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 54354115 - 54354033
Alignment:
Q  304 acctaatatcatcatactcataaatctttaaaactcctcaaaaccatttccttcaaaaccgaattattctcattccaattctca 387  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||    
T  54354115 acctaatatcatcatacccataaatctttaaaactcctcgaaa-catttccttcaaaatcgaatcattctcattccaattctca 54354033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5689795 - 5689913
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||  |         |||||||||||||||||||||||||| ||||    
T  5689795 acgtcccttaacttatttcttttattaaatttggtccaattttgataattttaatcctttaaaacaagagaccgttggattacggaggtctatcagattt 5689894  T
Q  100 tacagtgtatcaccaacac 118  Q
    || ||||||||||||||||    
T  5689895 tatagtgtatcaccaacac 5689913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28777729 - 28777607
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  28777729 acgtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 28777630  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||| ||||||||||    
T  28777629 tatagtgtatcatcaacacctaa 28777607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 54353101 - 54353221
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaat-cccatnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||          ||||||||||||||| |||||||||| ||||||    
T  54353101 gtcccttaacttatttcttttactcaatttggtccaatttttataattttaatccccgaaaaaaagagaccgttggattacgaaggtctatcagatttta 54353200  T
Q  102 cagtgtatcaccaacacctaa 122  Q
      ||||||||| |||||||||    
T  54353201 tcgtgtatcactaacacctaa 54353221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 17742335 - 17742212
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  17742335 acgtcccttaacttatttcttttattaaatttgatccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 17742236  T
Q  100 -tacagtgtatcaccaacacctaa 122  Q
     |||||||||||| ||||||||||    
T  17742235 atacagtgtatcaacaacacctaa 17742212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19043655 - 19043532
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  19043655 acgtcccttaacttatttcttttattaaatttgatccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 19043556  T
Q  100 -tacagtgtatcaccaacacctaa 122  Q
     |||||||||||| ||||||||||    
T  19043555 atacagtgtatcaacaacacctaa 19043532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 37610798 - 37610683
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| |||||| ||||    
T  37610798 ttaacttattttttttattcaatttggtccaattttgataattttaatcccctaaaaaaaaagaccgttggattacggaggtctatcagattttatagtg 37610699  T
Q  107 tatcaccaacacctaa 122  Q
    ||||||||||||||||    
T  37610698 tatcaccaacacctaa 37610683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 43394096 - 43393973
Alignment:
Q  1 acgtcccttaacttattt-cttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||| |||||| | || ||||||||||||| |||||||||| ||| |         |||||||||||||||||||||||||| |||    
T  43394096 acgtcccttaacttattttcttttattcaaattggtccaattttgataattttaaccccctaaaaaaagagaccgttggattacggaggtctatcagatt 43393997  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||||||||||||    
T  43393996 ttacagtgtatcaccaacacctaa 43393973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5691136 - 5691015
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | || ||| ||||||||| ||||||| |||||| |         |||||||||||||||||||||||||| ||||    
T  5691136 acgtcccttaacttatttcttttattaaacttg-tccaattttgataatttaaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 5691038  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  5691037 tacagtgtatcaccaacacctaa 5691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31937111 - 31937233
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||| |||||||| ||||| | | |||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||    
T  31937111 acgtcccttcacttatttattttattcattttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattt 31937210  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  31937211 tatagtgtatcaccaacacctaa 31937233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31938349 - 31938227
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| |         ||||||||||||||| |||||||| | ||||    
T  31938349 acgtcccttaacttatttcttttattcaatttagtccaattttaataattttaatcccctaaaaaaagagaccgttggattacgaaggtctataagattt 31938250  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  31938249 tatagtgtatcaccaacacctaa 31938227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17116278 - 17116399
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||           |||||||||||||||||||| |||| | |||    
T  17116278 acgtcccttaacttatttcttttattcaatttggttcaattttgataattttaatccctaaaaaatgacaccgttggattacggaggtccatcagagttt 17116377  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||||||||||||||||||||    
T  17116378 atagtgtatcaccaacacctaa 17116399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 52522003 - 52522124
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    |||||| || |||||||| ||||| | |||||||||||||||| |||| ||||||||| |        ||| |||||||||||||||||||||| |||||    
T  52522003 acgtcctttcacttatttattttattcaatttggtccaattttgataactttaatcccctaaaaaaaagacagttggattacggaggtctatcagatttt 52522102  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||||||||||||||||||||    
T  52522103 atagtgtatcaccaacacctaa 52522124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 55209858 - 55209979
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaatttt 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||           |||| ||||||||||||||||||||| | |||    
T  55209858 acgtcccttaatttatttcttttatttaatttggtccaattttgataattttaatccacgaaaaaagagaccattggattacggaggtctatcagaattt 55209957  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||||||| ||||||||||||    
T  55209958 atagtgtattaccaacacctaa 55209979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 17740908 - 17741028
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||| ||||||||| |||||||||||||  |         |||||| ||||||||||||||||||| ||||||    
T  17740908 gtcccttaacttatttcttttattaaatttgatccaattttgataattttaatcctttaaaaatagagaccgtcggattacggaggtctatcagatttta 17741007  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     ||||||||||||||||||||    
T  17741008 tagtgtatcaccaacacctaa 17741028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 19042228 - 19042348
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||| ||||||||| |||||||||||||  |         |||||| ||||||||||||||||||| ||||||    
T  19042228 gtcccttaacttatttcttttattaaatttgatccaattttgataattttaatcctttaaaaatagagaccgtcggattacggaggtctatcagatttta 19042327  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     ||||||||||||||||||||    
T  19042328 tagtgtatcaccaacacctaa 19042348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 28776526 - 28776646
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    ||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||||||||| ||||||    
T  28776526 gtcccttaactgatttcttttattcaatttggtccaattttgataattttaatcccctaaaaacagagaccgttggattacggaggtctatcagatttta 28776625  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     | ||||||| ||||||||||    
T  28776626 taatgtatcatcaacacctaa 28776646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 35758082 - 35758202
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||||||  |          |||||||||||||| | |||||||| ||||||    
T  35758082 gtcccttaacttatttcttttattcaatttggtccaattttgataattttaatccaaaaaaaaaacaaaccgttggattacgaatgtctatcagatttta 35758181  T
Q  102 cagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||    
T  35758182 cagtgtatcaccaacacctaa 35758202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 35759273 - 35759151
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||  |          ||||||||||||||| | |||||||| ||||    
T  35759273 acgtcccttaatttatttcttttattcaatttggtccaattttgataattttaatctaaaaaaaaaacagaccgttggattacgaatgtctatcagattt 35759174  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  35759173 tacagtgtatcaccaacacctaa 35759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 46903666 - 46903544
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||| | |||||||| ||||||| || ||||||||||| |         |||||||||||||||||||||||| | ||||    
T  46903666 acgtcctttaacttatttcttttattcaatttggtacaattttgatgattttaatcccctaaaaaaaaagaccgttggattacggaggtctattagattt 46903567  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  46903566 tatagtgtatcaccaacacctaa 46903544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 54354433 - 54354311
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaa-tcccatnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||| | | |||||||||||||||| |||||||||| ||||          |||| ||||||||  ||||||||||| ||||    
T  54354433 acgtcccttaacttatttctttgattcaatttggtccaattttgataattttaattccctataaaaagagaccattggattatagaggtctatcagattt 54354334  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||    
T  54354333 tacagtgtatcaccaacacctaa 54354311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 23073414 - 23073294
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | ||  |||| ||||||| |||||||||||||| |         |||||||| ||||||||||| ||||||||||||    
T  23073414 gtcccttaacttatttcttttattcaaactggttcaattttgataattttaatcccctaaaaaaagagaccgttgaattacggaggtgtatcaaatttta 23073315  T
Q  102 cagtgtatcaccaacacctaa 122  Q
    | |||||||||||||||||||    
T  23073314 cggtgtatcaccaacacctaa 23073294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47431229 - 47431107
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||| ||||||||||||||||||  | |||||||||||||||| |||||||||||||| |         ||||||||||||| |||||||||| | ||||    
T  47431229 acgttccttaacttatttcttttgttcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattatggaggtctattagattt 47431130  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||| ||||||||    
T  47431129 tatagtgtatcacccacacctaa 47431107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 46902407 - 46902526
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |         ||  ||| |||||||||||||||||| ||||    
T  46902407 acgtcccttaacttatttcttttattcaatttggtgcaattttgataattttaatcccctaaaagaagagattgttagattacggaggtctatcagattt 46902506  T
Q  100 tacagtgtatcaccaacacc 119  Q
    || |||||||||| ||||||    
T  46902507 tatagtgtatcactaacacc 46902526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 53180839 - 53180724
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||| ||||| | ||||| |||||||||| |||||||||||||  |         |||||||||||||||||||||||||| ||| || ||||    
T  53180839 ttaacttattttttttattcaatttagtccaattttaataattttaatcctctaaaaaaggagaccgttggattacggaggtctatcagattgtatagtg 53180740  T
Q  107 tatcaccaacacctaa 122  Q
    ||||||||||||||||    
T  53180739 tatcaccaacacctaa 53180724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2232678 - 2232800
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||||||||| | |||||  ||||||||| |||||||||||||| |         |||| ||||||||||||||||||| | ||||    
T  2232678 acgtcccttaatttatttcttttattcaatttaatccaattttaataattttaatcccctagaaaaaaagaccattggattacggaggtctatgagattt 2232777  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    ||| |||||||| ||||||||||    
T  2232778 tacggtgtatcagcaacacctaa 2232800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 2233345 - 2233291
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  2233345 gtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcc 2233291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 53766008 - 53765951
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    |||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||    
T  53766008 acgtcccttaacttatttcttttattcaatttgatccaattttaataattttaatccc 53765951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37609397 - 37609519
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||| ||||||||||||||| | |||||| ||||||||| |||||||||||||| |         ||||||||||||| |||||||||| | ||||    
T  37609397 acgtccctcaacttatttcttttattcaatttgatccaattttaataattttaatcccctaaaaaaagagaccgttggattagggaggtctataagattt 37609496  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
     | ||||| ||| ||||||||||    
T  37609497 aatagtgtctcatcaacacctaa 37609519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 50879835 - 50879885
Alignment:
Q  72 cgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  50879835 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 50879885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 52525398 - 52525344
Alignment:
Q  4 tcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    ||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||    
T  52525398 tcccttaacttatttcttttattcaatttagtccaattttaataattttaatccc 52525344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 10979148 - 10979095
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  10979148 gaccattggattacggaggtttatcaaattttacggtgtatcaccaacatctaa 10979095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 11348508 - 11348399
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttacag 104  Q
    |||||||| |||||||||| |||||||| ||||||||| ||||||||||| || |         |||||||| ||||||||||||||||| |||||| ||    
T  11348508 ccttaactaatttcttttatttaatttgatccaattttgataattttaattccttagaaaaagagaccgttgaattacggaggtctatcagattttatag 11348409  T
Q  105 tgtatcacca 114  Q
    | ||||||||    
T  11348408 tatatcacca 11348399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 10978151 - 10978203
Alignment:
Q  70 accgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||| |||||||| |||||||| |||||||||||| |||||||    
T  10978151 accgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaa 10978203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21729230 - 21729174
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    |||||||||||||||||||||||| | |||||| | ||||||| |||||||||||||    
T  21729230 acgtcccttaacttatttcttttattcaatttgattcaattttgataattttaatcc 21729174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33113361 - 33113306
Alignment:
Q  1 acgtcccttaacttatttcttttactt-aatttggtccaatttttataattttaat 55  Q
    |||||||||||||||||||||||  || |||||||||||||||| |||||||||||    
T  33113361 acgtcccttaacttatttctttttattcaatttggtccaattttgataattttaat 33113306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 11346888 - 11347010
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||| |||||| |||||||||||| | |||||| ||||||||| |||||||||||||| |         |||| |||||||| | ||||||| || |||     
T  11346888 acgtgccttaatttatttcttttattcaatttgttccaattttgataattttaatcccctgaaaagagagaccattggattatgaaggtctaccatattg 11346987  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  11346988 tatagtgtatcaccaacacctaa 11347010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53178777 - 53178835
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccca 59  Q
    |||| ||||||||||||||||||| | |||||| ||||||||| || ||||||||||||    
T  53178777 acgttccttaacttatttcttttattcaatttgatccaattttgatcattttaatccca 53178835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 21727988 - 21728041
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  21727988 gtcccttaacttatttcttttattcaatttgattcaattttgataattttaatc 21728041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 47429771 - 47429820
Alignment:
Q  73 gttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||| | |||||| ||||||||||||||| ||||    
T  47429771 gttggattacggaggtctattagattttatagtgtatcaccaacatctaa 47429820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50881151 - 50881094
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    ||||||||||| |||||||||||| | ||||| || ||||||| ||||||||||||||    
T  50881151 acgtcccttaatttatttcttttattcaatttagttcaattttgataattttaatccc 50881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 53764504 - 53764561
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    |||||| ||||||||||||||||| | ||||| ||| |||||| ||||||||||||||    
T  53764504 acgtcctttaacttatttcttttattcaatttagtcaaattttgataattttaatccc 53764561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 53764896 - 53764944
Alignment:
Q  70 accgttggattacggaggtctatcaaattttacagtgtatcaccaacac 118  Q
    ||||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  53764896 accgttgaattacggaggtctatcagattttatggtgtatcaccaacac 53764944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23091267 - 23091322
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    ||||| ||||||||| |||||||| | |||||||||||| ||| ||||||||||||    
T  23091267 acgtctcttaacttaattcttttattcaatttggtccaactttgataattttaatc 23091322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 47917647 - 47917536
Alignment:
Q  9 taacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtgt 107  Q
    |||||||||||||||| | |||||| || |||||| |||||||||||||| |         ||  |||||||||||||||| ||||| |||||| |||||    
T  47917647 taacttatttcttttattcaatttgatctaattttaataattttaatcccctaaaaataaagattgttggattacggaggtttatcagattttatagtgt 47917548  T
Q  108 atcaccaacacc 119  Q
    || |||||||||    
T  47917547 attaccaacacc 47917536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 55210945 - 55210894
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    ||||||||||||||||||| | |||||||  ||||||| |||||||||||||    
T  55210945 ccttaacttatttcttttattaaatttggatcaattttgataattttaatcc 55210894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 17742180 - 17742146
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaa 170  Q
    ||||||||||||||||||||||||| |||||||||    
T  17742180 ttcatcttctttcaaccttcatcatcccataaaaa 17742146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 19043500 - 19043466
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaa 170  Q
    ||||||||||||||||||||||||| |||||||||    
T  19043500 ttcatcttctttcaaccttcatcatcccataaaaa 19043466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 33111815 - 33111765
Alignment:
Q  72 cgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||| ||||||||||||||| |||||||| |||||||| || ||||||||    
T  33111815 cgttgtattacggaggtctataaaattttatagtgtatctcccacacctaa 33111765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46986132 - 46986077
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    |||||||||||||||||| | ||| | ||||||||| |||||| |||||||||||||    
T  46986132 acgtcccttaacttattt-tcttattaaatttggtcaaattttgataattttaatcc 46986077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 53765934 - 53765894
Alignment:
Q  74 ttggattacggaggtctatcaaattttacagtgtatcacca 114  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  53765934 ttggattacggaggtctacgagattttacagtgtatcacca 53765894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43113750 - 43113872
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||| ||||||||||| ||||    
T  43113750 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacagaggtctatcagattt 43113849  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || |||||||||||| |||||||    
T  43113850 tatagtgtatcaccagcacctaa 43113872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 45400052 - 45399930
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |         ||||||||||||||| |||||||||| ||||    
T  45400052 acgtcccttaacttatttcttttatttactttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacgaaggtctatcagattt 45399953  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || |||||||||| |||||||||    
T  45399952 tatagtgtatcactaacacctaa 45399930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 29186740 - 29186862
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||| ||||| | |||||||| ||||||| |||||||||||||| |         |||||| ||||||||||||||||||| ||||    
T  29186740 acgtcccttaacttatttattttattcaatttggttcaattttgataattttaatcccttaaaaaatgagaccgtaggattacggaggtctatcagattt 29186839  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  29186840 tatagtgtatcaccaacacctaa 29186862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 44230503 - 44230625
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||| | |||||||||||||||| ||||||| |||||| |         |||||||||||||| ||||||||||| ||||    
T  44230503 acgtcctttaacttatttcttttattcaatttggtccaattttaataatttcaatcccctacgaaaagagaccgttggattacagaggtctatcagattt 44230602  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    |||||||||||| ||||||||||    
T  44230603 tacagtgtatcatcaacacctaa 44230625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 9392855 - 9392735
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||| ||||||||||| ||||||    
T  9392855 gtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctagaaaaagagaccgttggattacagaggtctatcagatttta 9392756  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     |||||||||||  |||||||    
T  9392755 tagtgtatcaccggcacctaa 9392735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 18787226 - 18787342
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         |||||||||||||||||||| ||||| ||||||    
T  18787226 gtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaatagaccgttggattacggaggtttatcagatttta 18787325  T
Q  102 cagtgtatcaccaacac 118  Q
      |||||||||||||||    
T  18787326 tggtgtatcaccaacac 18787342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18788600 - 18788480
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |          ||||||||||||||| |||||||||| ||||||    
T  18788600 gtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcctctaaaaaaatagaccgttggattacgaaggtctatcagatttta 18788501  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     | ||||||||||||||||||    
T  18788500 taatgtatcaccaacacctaa 18788480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 7011711 - 7011832
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn--gaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||| ||||||||||||| | |||||||||||||||| |||||||||||||  |          |||||||||||||||||||||||| | |||||    
T  7011711 gtcccttagcttatttcttttattcaatttggtccaattttgataattttaatccattaaaaaaaaaagaccgttggattacggaggtctataagatttt 7011810  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||||||||||||||||||||    
T  7011811 atagtgtatcaccaacacctaa 7011832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 7027069 - 7027190
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn--gaccgttggattacggaggtctatcaaatttt 100  Q
    |||||||| ||||||||||||| | |||||||||||||||| |||||||||||||  |          |||||||||||||||||||||||| | |||||    
T  7027069 gtcccttagcttatttcttttattcaatttggtccaattttgataattttaatccattaaaaaaaaaagaccgttggattacggaggtctataagatttt 7027168  T
Q  101 acagtgtatcaccaacacctaa 122  Q
    | ||||||||||||||||||||    
T  7027169 atagtgtatcaccaacacctaa 7027190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19217703 - 19217825
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| ||||||||||||||||| | |||||||| ||||||| ||||||||||| || |         |||||||||||||||||||||||||  ||||    
T  19217703 acgtccattaacttatttcttttattcaatttggtacaattttgataattttaataccctaaaaaaagagaccgttggattacggaggtctatcggattt 19217802  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||||||||||||||||||||    
T  19217803 tatagtgtatcaccaacacctaa 19217825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 44748603 - 44748483
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaatttta 101  Q
    ||||||||| |||||||||||| | ||| |||||||||||| |||||||||||||| |         ||| ||||||||||| |||||||||| ||||||    
T  44748603 gtcccttaatttatttcttttattcaatatggtccaattttgataattttaatcccctagaaaaggagactgttggattacgaaggtctatcagatttta 44748504  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     ||||||||||||||||||||    
T  44748503 tagtgtatcaccaacacctaa 44748483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13750678 - 13750567
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |         ||||||||||||||| |||||||| | ||||    
T  13750678 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatcccctaaaaaaacagaccgttggattacgaaggtctattagattt 13750579  T
Q  100 tacagtgtatca 111  Q
    || |||||||||    
T  13750578 tatagtgtatca 13750567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 44746809 - 44746924
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattttacagtg 106  Q
    ||||||||||||||||| | ||||||||| |||||| |||||||||||||| |         |||||||||||||||||||||||||| |||||| ||||    
T  44746809 ttaacttatttcttttattcaatttggtcaaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcatattttatagtg 44746908  T
Q  107 tatcaccaacacctaa 122  Q
    ||| | ||||||||||    
T  44746909 tattatcaacacctaa 44746924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 44417533 - 44417655
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||| ||||  | |||||||||||||||| |||||||||||||| |         ||  |||||||||||||||||||||| ||||    
T  44417533 acgtcccttaacttatttattttcttcaatttggtccaattttgataattttaatcccctaaaaaaagagattgttggattacggaggtctatcagattt 44417632  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||| ||||||||||||||||    
T  44417633 tatagtctatcaccaacacctaa 44417655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 32518557 - 32518610
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  32518557 gaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaa 32518610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9391595 - 9391714
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||| |||||||||||||| | |||||||| ||||||| |||||||||||||  |         ||||||||||||||| |||||||||| ||||    
T  9391595 acgtcccttcacttatttcttttattcaatttggtacaattttgataattttaatcctttaaaaaaagagaccgttggattacgaaggtctatcagattt 9391694  T
Q  100 tacagtgtatcaccaacacc 119  Q
    || ||||||||| |||||||    
T  9391695 tatagtgtatcatcaacacc 9391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3537502 - 3537624
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    |||||||||||||||||||||||| | ||||| ||| |||||| |||||||||||||| |          |||||||||||||| |||||||| ||||||    
T  3537502 acgtcccttaacttatttcttttattcaatttagtctaattttaataattttaatcccctaaaaaaagaaaccgttggattacgaaggtctataaaattt 3537601  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || ||| |||||||| |||||||    
T  3537602 tatagtatatcaccatcacctaa 3537624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 29188072 - 29187950
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||| ||||| | ||||| |||||||||| |||||||||||||| |         |||||||||||| | ||||||||||| ||||    
T  29188072 acgtcccttaatttatttattttattcaatttagtccaattttgataattttaatcccctaaaaaaagagaccgttggattgcagaggtctatcagattt 29187973  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || |||| |||||||||||||||    
T  29187972 tatagtgcatcaccaacacctaa 29187950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43961009 - 43961131
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaattt 99  Q
    ||||||||||| |||||||||||| | |||||| ||||||||| ||||||||||||| |          ||||||||||||||  |||||||||| ||||    
T  43961009 acgtcccttaatttatttcttttattcaatttgatccaattttgataattttaatcctctacaaaaacagaccgttggattacaaaggtctatcagattt 43961108  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    || |||||||||| |||||||||    
T  43961109 tatagtgtatcactaacacctaa 43961131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 3538546 - 3538493
Alignment:
Q  69 gaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  3538546 gaccgttggattacggagatctatcaaattttacggtgtatcaccaacatctaa 3538493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 27072694 - 27072574
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||||| |           ||||||||||||| ||||||||| | ||||||    
T  27072694 gtcccttaacttatttcttttattcaatttggtcaaattttgataattttaatccactaaaaaaaaaaaccgttggattacagaggtctataagatttta 27072595  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     ||| ||||||||||||||||    
T  27072594 tagtttatcaccaacacctaa 27072574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 27205619 - 27205739
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||||| |           ||||||||||||| ||||||||| | ||||||    
T  27205619 gtcccttaacttatttcttttattcaatttggtcaaattttgataattttaatccactaaaaaaaaaaaccgttggattacagaggtctataagatttta 27205718  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     ||| ||||||||||||||||    
T  27205719 tagtctatcaccaacacctaa 27205739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 43962609 - 43962489
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc-ccatnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||| ||||||||| ||||||||||||  |          ||||||||||||||| |||||||||| ||||||    
T  43962609 gtcccttaacttatttcttttattcaatttgatccaattttgataattttaatcatctaaaaaaacagaccgttggattacgaaggtctatcagatttta 43962510  T
Q  102 cagtgtatcaccaacacctaa 122  Q
     ||| |||||| |||||||||    
T  43962509 tagtatatcactaacacctaa 43962489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48793558 - 48793503
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  48793558 acgtcccttaacttatttcttttattcaatttgatccaattttgataattttaatc 48793503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 37237198 - 37237148
Alignment:
Q  72 cgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  37237198 cgttggattacggaggtctatcagattttatagtgtatgaccaacacctaa 37237148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44420564 - 44420510
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaat 55  Q
    |||||||||||||||||||||||| | ||||| |||||||||| |||||||||||    
T  44420564 acgtcccttaacttatttcttttattcaatttagtccaattttgataattttaat 44420510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 26005429 - 26005545
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||||| ||||||| ||||||||| ||| |          ||||||||||||||  |||||||| | ||||||    
T  26005429 gtcccttaacttatttcttttattcaatttggttcaattttgataattttactccactaaaaaaagagaccgttggattacaaaggtctataagatttta 26005528  T
Q  102 cagtgtatcaccaacac 118  Q
     ||||||||||||||||    
T  26005529 tagtgtatcaccaacac 26005545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 43115124 - 43115072
Alignment:
Q  6 ccttaacttatttcttttacttaatttggtccaatttttataattttaatccc 58  Q
    ||||||||||||||||||| | |||||| ||||||||| ||||||||||||||    
T  43115124 ccttaacttatttcttttattcaatttgatccaattttgataattttaatccc 43115072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 32519788 - 32519669
Alignment:
Q  4 tcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccat-nnnnnnnngaccgttggattacggaggtctatcaaattttac 102  Q
    |||||||| |||||||||||| | |||||||| ||||||| |||||||||||||| |         |||||||| |||||| ||||||| || ||| ||     
T  32519788 tcccttaaattatttcttttattcaatttggttcaattttaataattttaatcccttaaaaaaagagaccgttgaattacgaaggtctaccagattgtat 32519689  T
Q  103 agtgtatcaccaacacctaa 122  Q
    ||||| ||||||||||||||    
T  32519688 agtgtgtcaccaacacctaa 32519669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 13597291 - 13597341
Alignment:
Q  72 cgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||| |||||||||| | |||||| ||||||||||||||||||||    
T  13597291 cgttggattagggaggtctataagattttatagtgtatcaccaacacctaa 13597341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 13599226 - 13599177
Alignment:
Q  73 gttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||| |||||| |||||||||  |||||||||    
T  13599226 gttggattacggaggtctatcagattttatagtgtatcagtaacacctaa 13599177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 48792521 - 48792574
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    |||||||||||||||||||||| | |||||| || |||||| ||||||||||||    
T  48792521 gtcccttaacttatttcttttattcaatttgatctaattttgataattttaatc 48792574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 13599293 - 13599246
Alignment:
Q  8 ttaacttatttcttttacttaatttggtccaatttttataattttaat 55  Q
    ||||||||||||||||| | |||||| ||||||||| |||||||||||    
T  13599293 ttaacttatttcttttattcaatttgctccaattttgataattttaat 13599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 37235890 - 37235941
Alignment:
Q  2 cgtcccttaacttatttcttttacttaatttggtccaatttttataatttta 53  Q
    ||||||||||||||||||||| | | |||||||||||||||| | |||||||    
T  37235890 cgtcccttaacttatttctttgattcaatttggtccaattttgagaatttta 37235941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 37235939 - 37235982
Alignment:
Q  79 ttacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||    
T  37235939 ttacggaggtcaatcagattttacaatgtatcaccaacacctaa 37235982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13597220 - 13597275
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc 57  Q
    |||||||| ||||||||||||||| | |||||| | ||||||| |||||||||||||    
T  13597220 acgtccctgaacttatttcttttattaaatttgat-caattttgataattttaatcc 13597275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 37235831 - 37235863
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggt 35  Q
    |||||||||||||||||||||| ||||||||||    
T  37235831 gtcccttaacttatttcttttatttaatttggt 37235863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 44420494 - 44420443
Alignment:
Q  70 accgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||| |||||||||| | |||| ||||||||||||||| ||||    
T  44420494 accgttggattacgaaggtctatcaga-tttatagtgtatcaccaacatctaa 44420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3069 - 2946
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc--catnnnnnnnngaccgttggattacggaggtctatcaaatt 98  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||   |         ||||||| ||||||| |||||||||| |||    
T  3069 acgtcccttaacttatttcttttattcaatttggtccaattttgataattttaatccaaaaaaaaaaacagaccgttagattacgaaggtctatcagatt 2970  T
Q  99 ttacagtgtatcaccaacacctaa 122  Q
    ||| ||||||||||||||||||||    
T  2969 ttatagtgtatcaccaacacctaa 2946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 1847 - 1966
Alignment:
Q  3 gtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcc-catnnnnnnnngaccgttggattacggaggtctatcaaatttta 101  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||||  |         ||||||| ||||||| | |||||| | |||||     
T  1847 gtcccttaacttatttcttttattcaatttggtccaa-ttttataattttaatccaaaaaaaatatagaccgttagattacgaatgtctattagattttc 1945  T
Q  102 cagtgtatcaccaacacctaa 122  Q
    |||||||||||||||||||||    
T  1946 cagtgtatcaccaacacctaa 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9259 - 9355
Alignment:
Q  26 ttaatttggtccaatttttataattttaatcccatnnnnnnnngaccgttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||| ||||||||| || ||||||||||| |        |||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  9259 ttaatttgatccaattttgatgattttaatcccctaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaa 9355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 210 - 332
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| |||| ||||||| |||| | ||||||||| |||||| ||||||||||| || |         |||||||||||||| ||||||||||| ||||    
T  210 acgtcctttaatttatttcctttattcaatttggtcaaattttgataattttaattccttaaaaaaagagaccgttggattacagaggtctatcagattt 309  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    ||||| |||||||||||||||||    
T  310 tacagcgtatcaccaacacctaa 332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1643 - 1521
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatcccatnnnnnnnn-gaccgttggattacggaggtctatcaaattt 99  Q
    |||||| |||| ||||||| |||| | |||||||||||||||| |||||||||||||| |         |||||||||||||  ||||||||||| ||||    
T  1643 acgtcctttaatttatttcctttattcaatttggtccaattttgataattttaatcccttaaaaaaacagaccgttggattatagaggtctatcagattt 1544  T
Q  100 tacagtgtatcaccaacacctaa 122  Q
    ||| |||||| ||||||||||||    
T  1543 tacggtgtataaccaacacctaa 1521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 367 - 401
Alignment:
Q  136 ttcatcttctttcaaccttcatcatgccataaaaa 170  Q
    ||||||||||||||||||||||||| |||||||||    
T  367 ttcatcttctttcaaccttcatcatcccataaaaa 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25387 - 25332
Alignment:
Q  1 acgtcccttaacttatttcttttacttaatttggtccaatttttataattttaatc 56  Q
    ||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||    
T  25387 acgtcccttaatttatttcttttattaaatttggtccaattttgataattttaatc 25332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 25313 - 25264
Alignment:
Q  73 gttggattacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    |||||||||||||||| ||||| |||||| ||||||| | ||||||||||    
T  25313 gttggattacggaggtttatcacattttatagtgtattatcaacacctaa 25264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 104405 - 104449
Alignment:
Q  78 attacggaggtctatcaaattttacagtgtatcaccaacacctaa 122  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  104405 attacggaggtctatcagattttatagtgtatcaccaacatctaa 104449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University