View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7944_low_4 (Length: 343)
Name: NF7944_low_4
Description: NF7944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7944_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 28035142 - 28035276
Alignment:
| Q |
197 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgcttgaa-nnnnnnnnctgc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
28035142 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgcttcaatttttttttctgc |
28035241 |
T |
|
| Q |
296 |
cattatatgtgtttgctttgtgcaccactcaagta |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035242 |
cattatatgtgtttgctttgtgcaccactcaagta |
28035276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 28034972 - 28035073
Alignment:
| Q |
28 |
gtaaaattcctttggagaaaacgttggaatgtaacaagtaaaacatttgttgattcagtatgttatgcttaatctatacaaactacactcatgcaacact |
127 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28034972 |
gtaaaattcctttgtagaaaacgttggaatgtaacaagtaaaacatttgttgattcagtatgttatgcttaatctatacaaactacactcatgcaacact |
28035071 |
T |
|
| Q |
128 |
gt |
129 |
Q |
| |
|
|| |
|
|
| T |
28035072 |
gt |
28035073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 8758077 - 8758023
Alignment:
| Q |
213 |
atggaatcctctggtacctcttgattgataaagttccaacctacttttggcttct |
267 |
Q |
| |
|
|||||||||||| | |||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
8758077 |
atggaatcctcttgaacctctagactgataaagctccaacctactcttggcttct |
8758023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University