View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7944_low_6 (Length: 250)

Name: NF7944_low_6
Description: NF7944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7944_low_6
NF7944_low_6
[»] chr2 (4 HSPs)
chr2 (3-216)||(11908732-11908946)
chr2 (121-241)||(43670892-43671013)
chr2 (121-241)||(3363378-3363499)
chr2 (121-198)||(41456841-41456918)
[»] chr7 (11 HSPs)
chr7 (1-118)||(7156722-7156839)
chr7 (121-241)||(48456500-48456621)
chr7 (121-241)||(25500713-25500833)
chr7 (121-242)||(21900043-21900165)
chr7 (121-241)||(41453817-41453938)
chr7 (133-241)||(10861138-10861247)
chr7 (121-241)||(28602532-28602653)
chr7 (3-116)||(41530498-41530611)
chr7 (121-228)||(26603149-26603258)
chr7 (121-228)||(22853083-22853191)
chr7 (130-228)||(23613552-23613652)
[»] chr6 (6 HSPs)
chr6 (123-241)||(13735090-13735209)
chr6 (121-241)||(10080555-10080676)
chr6 (121-241)||(13556229-13556350)
chr6 (130-217)||(1166349-1166437)
chr6 (129-239)||(1052342-1052453)
chr6 (121-228)||(27671274-27671382)
[»] chr1 (11 HSPs)
chr1 (121-241)||(39807184-39807304)
chr1 (3-118)||(15276825-15276940)
chr1 (132-241)||(47295130-47295240)
chr1 (169-228)||(21818635-21818695)
chr1 (121-241)||(2823675-2823796)
chr1 (133-213)||(28412635-28412716)
chr1 (121-228)||(28997170-28997279)
chr1 (121-228)||(29002886-29002995)
chr1 (121-228)||(44242521-44242630)
chr1 (121-223)||(31073554-31073657)
chr1 (169-228)||(38671222-38671282)
[»] scaffold0012 (1 HSPs)
scaffold0012 (121-239)||(203135-203254)
[»] chr5 (9 HSPs)
chr5 (121-228)||(2823417-2823524)
chr5 (121-219)||(4693183-4693282)
chr5 (121-241)||(2153056-2153177)
chr5 (169-228)||(20900478-20900538)
chr5 (121-228)||(4974731-4974840)
chr5 (121-228)||(30579133-30579241)
chr5 (121-198)||(9844559-9844636)
chr5 (121-228)||(40957564-40957673)
chr5 (121-228)||(2440041-2440149)
[»] chr4 (5 HSPs)
chr4 (121-241)||(666538-666659)
chr4 (169-228)||(23542526-23542586)
chr4 (121-228)||(13002807-13002915)
chr4 (121-223)||(16406496-16406600)
chr4 (121-228)||(36753704-36753812)
[»] chr3 (4 HSPs)
chr3 (129-241)||(4507573-4507686)
chr3 (121-228)||(20649855-20649963)
chr3 (121-198)||(4591994-4592071)
chr3 (130-221)||(10940134-10940226)
[»] chr8 (6 HSPs)
chr8 (121-241)||(2267354-2267475)
chr8 (122-241)||(38658305-38658425)
chr8 (169-241)||(5063028-5063101)
chr8 (121-241)||(45067398-45067519)
chr8 (121-228)||(15013648-15013756)
chr8 (150-198)||(4973086-4973134)
[»] scaffold0265 (1 HSPs)
scaffold0265 (169-228)||(14114-14174)
[»] scaffold0536 (1 HSPs)
scaffold0536 (121-228)||(11303-11412)
[»] scaffold0510 (1 HSPs)
scaffold0510 (121-228)||(2188-2297)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 11908732 - 11908946
Alignment:
Q  3 catacaagataaagagtgtctccaccagtcgttgtaatcaaaaacaaaattaagcacgttagcctttaaccatgagaaggaaagcagcttgactttgtct 102  Q
    |||||||||||||  |||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  11908732 catacaagataaaaggtgtctccaccagtcgtgataatcaaaaacaaaattaagcatgttcgcctttaaccatgagaaggaaagcagcttgactttgtct 11908831  T
Q  103 gaaatagagtgtaagttcataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcg 201  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||    
T  11908832 gaaatagagtgtaagttgataagtgtgagaaagtagtatttcaaatgtatatttaaggcacttttgttacttgtttcacaagtaatctagggaaaagccg 11908931  T
Q  202 agagaaaagtgatta 216  Q
    |||||||||||||||    
T  11908932 agagaaaagtgatta 11908946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 43671013 - 43670892
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||||||||||||||||||||||||   |||||| ||| | ||| ||||||||||||||||| ||  ||||||||  ||||||||||||||||||||    
T  43671013 ataagtgtcagaaagtagtatttcaaattattatttacggcacatttgttacttgtttcacaagttattcagggaaaagccgagagaaaagtgattattg 43670914  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||||||||||    
T  43670913 acctattacgctttattcatct 43670892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 3363499 - 3363378
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| |||||||||||||||||||||  |||||   || | ||| ||||||||||||||||| ||  |||||||| ||||||||||||||||||| |    
T  3363499 ataagtgccagaaagtagtatttcaaatgattatttccagcacatttgttacttgtttcacaagttattcagggaaaagtcgagagaaaagtgattatcg 3363400  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||||||||||    
T  3363399 acctattacgctttattcatct 3363378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 41456918 - 41456841
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa 198  Q
    ||||||||||| ||||||| |||  ||||| |||||| | | | |||||||||||||| |||||| ||||||||||||    
T  41456918 ataagtgtcaggaagtagtgttttcaatgtttatttacgacacgtttattacttgttttacaagttatctagggaaaa 41456841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7156722 - 7156839
Alignment:
Q  1 cccatacaagataaagagtgtctccaccagtcgttgtaatcaaaaacaaaattaagcacgttagcctttaaccatgagaaggaaagcagcttgactttgt 100  Q
    |||||||||||||| | |||||||||||| | ||||||||||||| |||||||||  |   |||||||||||||  ||||||||||||||||||||||||    
T  7156722 cccatacaagataacgggtgtctccaccaatggttgtaatcaaaagcaaaattaattatactagcctttaaccagaagaaggaaagcagcttgactttgt 7156821  T
Q  101 ctgaaatagagtgtaagt 118  Q
    ||||||||||||||||||    
T  7156822 ctgaaatagagtgtaagt 7156839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 48456621 - 48456500
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| |||||||||||||||||||||  |||||| ||| | ||| ||||||||||||||||| ||  ||| ||||  ||||||||||||||||||||    
T  48456621 ataagtgccagaaagtagtatttcaaatgattatttacggcacgtttgttacttgtttcacaagttattcaggaaaaagccgagagaaaagtgattattg 48456522  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||||||||||    
T  48456521 acctattacgctttattcatct 48456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 25500833 - 25500713
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatcgagagaaaagtgattattgc 220  Q
    ||||||| |||||||||||||||||||||  |||||| | | | ||| ||| ||||||||||||| ||  ||| |||  ||||||||||||||||||||     
T  25500833 ataagtgccagaaagtagtatttcaaatgattatttacgacacgtttgttatttgtttcacaagttattcaggaaaagccgagagaaaagtgattattga 25500734  T
Q  221 cctattacacgttattcatct 241  Q
    |||||||| | ||||||||||    
T  25500733 cctattacgccttattcatct 25500713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 21900043 - 21900165
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||||||| ||||||| ||| ||| || |||||| ||| | ||| ||||||||||||||||| ||||||||||||  |||||||||||||| | |||    
T  21900043 ataagtgtcaggaagtagtgttttaaaggtttatttacggcacatttgttacttgtttcacaagttatctagggaaaagccgagagaaaagtgaattttg 21900142  T
Q  220 ccctattacacgttattcatctc 242  Q
     |||||||| | ||| |||||||    
T  21900143 acctattacgctttagtcatctc 21900165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 41453817 - 41453938
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    |||||||||||||| ||||||||||||||  |||||| ||  | ||| |||||||||||| |||| ||  ||||||||  ||||||||||||||||||||    
T  41453817 ataagtgtcagaaaatagtatttcaaatgattatttatggtacgtttgttacttgtttcaaaagttattcagggaaaagccgagagaaaagtgattattg 41453916  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||||| ||||    
T  41453917 acctattacgctttattaatct 41453938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 10861138 - 10861247
Alignment:
Q  133 aagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattgccctattacacg 231  Q
    ||||||| ||| |||||| |||||| ||| | ||| ||||||||||||||||| ||||||||||||  |||||||||||||| | ||| |||||||| |     
T  10861138 aagtagtgttttaaatgtttatttacggcacgtttgttacttgtttcacaagttatctagggaaaagccgagagaaaagtgaattttgacctattacgct 10861237  T
Q  232 ttattcatct 241  Q
    ||| ||||||    
T  10861238 ttagtcatct 10861247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 28602532 - 28602653
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||||||| |||| |||||| |||||| |||||| ||| | ||| |||||||||| |||||| ||||||||||||  ||| |||||||||| | |||    
T  28602532 ataagtgtcaggaagtggtattttaaatgtttatttatggcacgtttgttacttgttttacaagttatctagggaaaagccgaaagaaaagtgaattttg 28602631  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||| ||||||    
T  28602632 acctattacgctttagtcatct 28602653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 41530611 - 41530498
Alignment:
Q  3 catacaagataaagagtgtctccaccagtcgttgtaatcaaaaacaaaattaagcacgttagcctttaaccatgagaaggaaagcagcttgactttgtct 102  Q
    |||||||||||||| |  |||||||||||||| ||| |||||| ||||| ||| ||  || ||||||||| |   ||| ||||||||||| |||||||||    
T  41530611 catacaagataaaggggatctccaccagtcgtggtagtcaaaagcaaaagtaatcatattggcctttaacaagaggaaagaaagcagcttaactttgtct 41530512  T
Q  103 gaaatagagtgtaa 116  Q
     |||||||||||||    
T  41530511 aaaatagagtgtaa 41530498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 26603258 - 26603149
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | |||||| |||||||||||    
T  26603258 ataagtgctagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattatt 26603159  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  26603158 gcccttttac 26603149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 22853083 - 22853191
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||  ||||| || || ||||||||||||||||  ||||| ||  ||||||||  ||||||| | ||||||||||    
T  22853083 ataagtgctagaaagttgtattttaaattaatattcaaagcacttttattacttgttttgcaagttattgagggaaaagccgagagataggtgattattg 22853182  T
Q  220 ccctattac 228  Q
    |||| ||||    
T  22853183 cccttttac 22853191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 23613652 - 23613552
Alignment:
Q  130 agaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgccctatta 227  Q
    ||||||| |||||| ||||| ||||||| || | ||||| ||||||||||  ||||| ||  |||||||| | |||||| |||||||||||||||| |||    
T  23613652 agaaagttgtattttaaatgatatattttagacacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattattgccctttta 23613553  T
Q  228 c 228  Q
    |    
T  23613552 c 23613552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 13735090 - 13735209
Alignment:
Q  123 aagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattgcc 221  Q
    ||||| |||||||||||||||||||||  |||||| ||| | ||| ||||||||||||||||| ||  ||||||||  |||||||||||||||||||| |    
T  13735090 aagtgccagaaagtagtatttcaaatgattatttacggcacgtttgttacttgtttcacaagttattcagggaaaagccgagagaaaagtgattattgac 13735189  T
Q  222 ctattacacgttattcatct 241  Q
    ||||||| | ||||||||||    
T  13735190 ctattacgctttattcatct 13735209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 10080555 - 10080676
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattg 219  Q
    ||||||| ||| ||||||||||| |||||  |||||| ||| | ||| ||||||||||||||||| |||||||||||| | ||||||||||||| | |||    
T  10080555 ataagtgccaggaagtagtattttaaatgcttatttacggcacgtttgttacttgtttcacaagttatctagggaaaagctgagagaaaagtgaattttg 10080654  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||| ||||||    
T  10080655 acctattacgctttagtcatct 10080676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 13556350 - 13556229
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| || ||||||||||||||||||  |||||  ||| | ||| |||||||||||||| || ||  |||||||| |||||||||||||||||||||    
T  13556350 ataagtgccataaagtagtatttcaaatgattattttcggcacatttgttacttgtttcacatgttattcagggaaaagtcgagagaaaagtgattattg 13556251  T
Q  220 ccctattacacgttattcatct 241  Q
     | |||||| | ||||||||||    
T  13556250 acttattacgctttattcatct 13556229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 1166349 - 1166437
Alignment:
Q  130 agaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctaggg-aaaatcgagagaaaagtgattat 217  Q
    ||||||| |||||| ||||| |||||||| || ||||||||||||||||  ||||| || ||||| |||| ||||||| ||||||||||    
T  1166349 agaaagttgtattttaaatgaatatttaaagcacttttattacttgttttccaagttatttagggaaaaaccgagagataagtgattat 1166437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 1052453 - 1052342
Alignment:
Q  129 cagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgccctatta 227  Q
    ||||||||||||||| ||||   |||||| ||| | ||| ||||||||||| ||||| ||  || ||||| | ||||||||||||||||||| |||||||    
T  1052453 cagaaagtagtatttaaaataattatttacggcacgtttgttacttgtttctcaagttattcagagaaaagccgagagaaaagtgattattgacctatta 1052354  T
Q  228 cacgttattcat 239  Q
    | | ||||||||    
T  1052353 cgctttattcat 1052342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 27671382 - 27671274
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||  ||||| || || ||||||||||||||||  ||||| ||  ||| ||||  ||||||| ||||||||||||    
T  27671382 ataagtgctagaaagttgtattttaaattaatattcaaagcacttttattacttgttttgcaagttattgaggaaaaagccgagagataagtgattattg 27671283  T
Q  220 ccctattac 228  Q
    |||| ||||    
T  27671282 cccttttac 27671274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 39807304 - 39807184
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatcgagagaaaagtgattattgc 220  Q
    ||||||||||| |||| |||||| |||||| |||||| | | | ||| |||||||||| |||||| |||||||||||| |||||||||||||||| |||     
T  39807304 ataagtgtcaggaagtggtattttaaatgtttatttatgacacgtttgttacttgttttacaagttatctagggaaaagcgagagaaaagtgatttttga 39807205  T
Q  221 cctattacacgttattcatct 241  Q
    |||||||| | ||| ||||||    
T  39807204 cctattacgctttagtcatct 39807184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 15276825 - 15276940
Alignment:
Q  3 catacaagataaagagtgtctccaccagtcgttgtaatcaaaaacaaaattaagcacgttagcctttaaccatgagaaggaaagcagcttgactttgtct 102  Q
    |||||||||||| | ||||||||||||||||| ||| |||||| ||||| ||| ||  |||||||||||| |   ||| ||||||||||| ||||||| |    
T  15276825 catacaagataaggggtgtctccaccagtcgtggtagtcaaaagcaaaagtaatcaaattagcctttaactagaggaaagaaagcagcttaactttgtat 15276924  T
Q  103 gaaatagagtgtaagt 118  Q
    ||||||||||||||||    
T  15276925 gaaatagagtgtaagt 15276940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 47295240 - 47295130
Alignment:
Q  132 aaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattgccctattacac 230  Q
    ||||||||||||||||||  |||||| ||| | ||| ||||||||||||||||| ||  ||||||||  ||||||||||||||||||||  |||||||      
T  47295240 aaagtagtatttcaaatgattatttacggcacgtttgttacttgtttcacaagttattcagggaaaagccgagagaaaagtgattattgatctattacgt 47295141  T
Q  231 gttattcatct 241  Q
     ||||||||||    
T  47295140 tttattcatct 47295130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 21818695 - 21818635
Alignment:
Q  169 ttacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgccctattac 228  Q
    ||||||||||||||||| || ||||||||| | |||||||||||||| |||||||||||||    
T  21818695 ttacttgtttcacaagttatttagggaaaagccgagagaaaagtgataattgccctattac 21818635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 2823675 - 2823796
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||||||| ||||||| ||| |||||| |||||| | | | ||| |||||||||| |||||  ||||||||||||  ||||||||||| || | |||    
T  2823675 ataagtgtcaggaagtagtgttttaaatgtttatttacgacacatttgttacttgttttacaagctatctagggaaaagccgagagaaaagggaattttg 2823774  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||| ||||||    
T  2823775 acctattacgctttaatcatct 2823796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 28412635 - 28412716
Alignment:
Q  133 aagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtga 213  Q
    ||||||| ||| |||||| |||||| |||   ||| ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  28412635 aagtagtgttttaaatgtttatttacggcatgtttgttacttgtttcacaagttatctagggaaaagccgagagaaaagtga 28412716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 28997279 - 28997170
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | |||||| |||||||||||    
T  28997279 ataagtgctagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattatt 28997180  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  28997179 gcccttttac 28997170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 29002995 - 29002886
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | |||||| |||||||||||    
T  29002995 ataagtgctagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattatt 29002896  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  29002895 gcccttttac 29002886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 44242630 - 44242521
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||| ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| |   |||||||| | |||||| |||||||||||    
T  44242630 ataagtgttagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttactgagggaaaagccgagagataagtgattatt 44242531  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  44242530 gcccttttac 44242521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 31073657 - 31073554
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||| ||||| || || ||||||||||||||||  ||||| ||  ||||||||  ||||| | ||||||||||||    
T  31073657 ataagtgctagaaagttgtattttaaatgaatattcaaagcacttttattacttgttttgcaagttattgagggaaaagccgagatataagtgattattg 31073558  T
Q  220 ccct 223  Q
    ||||    
T  31073557 ccct 31073554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 38671222 - 38671282
Alignment:
Q  169 ttacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattgccctattac 228  Q
    ||||||||||||||||| ||||||||||||  ||||| |||||||| | ||| ||||||||    
T  38671222 ttacttgtttcacaagttatctagggaaaagccgagaaaaaagtgaattttgacctattac 38671282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 203254 - 203135
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| |||||||||||||||||||||  |||||| ||| | ||| ||||||||||||||||| ||  ||||||||  |||||||||| |||||||||    
T  203254 ataagtgccagaaagtagtatttcaaatgattatttacggcacgtttgttacttgtttcacaagttattcagggaaaagccgagagaaaaatgattattg 203155  T
Q  220 ccctattacacgttattcat 239  Q
     |||||||| | ||||||||    
T  203154 acctattacgctttattcat 203135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 2823524 - 2823417
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatcgagagaaaagtgattattgc 220  Q
    ||||||| |||||||||||| |||||||| ||||||||||| ||||| ||||||||||  ||||| ||||||| |||  ||||||| |||||||||| ||    
T  2823524 ataagtgccagaaagtagtaattcaaatgaatatttaaggcacttttgttacttgttttgcaagttatctaggaaaagccgagagataagtgattatggc 2823425  T
Q  221 cctattac 228  Q
    ||| ||||    
T  2823424 ccttttac 2823417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 4693183 - 4693282
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| |||||||||||||||||||||  |||||| ||| | ||| ||||||||||||||||| ||  ||||||||  ||||||||||||||||||||    
T  4693183 ataagtgccagaaagtagtatttcaaatgattatttacggcacgtttgttacttgtttcacaagttattcagggaaaagccgagagaaaagtgattattg 4693282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 2153056 - 2153177
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||||||| ||||||| ||| |||||| |||||| | | | ||| |||||||||| |||||| ||||||||||||  ||||||||||| || | |||    
T  2153056 ataagtgtcaggaagtagtgttttaaatgtttatttacgacacgtttgttacttgttttacaagttatctagggaaaagccgagagaaaagggaattttg 2153155  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||| ||||||    
T  2153156 acctattacgctttagtcatct 2153177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 20900538 - 20900478
Alignment:
Q  169 ttacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgccctattac 228  Q
    ||||||||||||||||| || ||||||||| | |||||||||||||| |||||||||||||    
T  20900538 ttacttgtttcacaagttatgtagggaaaagccgagagaaaagtgataattgccctattac 20900478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 4974840 - 4974731
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | |||||| |||||||||||    
T  4974840 ataagtgctagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattatt 4974741  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  4974740 gcccttttac 4974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 30579133 - 30579241
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtg-attatt 218  Q
    |||||||  ||||||||||  ||||| ||||||||||| || ||||| | | ||||||||||||| || |||||||||  ||||||||||||| || |||    
T  30579133 ataagtgctagaaagtagtgattcaa-tgtatatttaaagcacttttgtaatttgtttcacaagttatttagggaaaagccgagagaaaagtgaataatt 30579231  T
Q  219 gccctattac 228  Q
    ||||||||||    
T  30579232 gccctattac 30579241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 9844636 - 9844559
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa 198  Q
    ||||||||| | ||||||| ||| ||| || |||||| ||| | ||| |||||||||| |||||| ||||||||||||    
T  9844636 ataagtgtcgggaagtagtgttttaaaggtttatttacggcacgtttgttacttgttttacaagttatctagggaaaa 9844559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 40957564 - 40957673
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatcga-gagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | | |||| |||||||||||    
T  40957564 ataagtgctagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagccaagagataagtgattatt 40957663  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  40957664 gcccttttac 40957673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 2440149 - 2440041
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||| ||||| || || ||||| ||||||||||  ||||| ||  |||||||| | |||||| ||||||||||||    
T  2440149 ataagtgctagaaagttgtattttaaatgaatattcaaagcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattattg 2440050  T
Q  220 ccctattac 228  Q
     ||| ||||    
T  2440049 tccttttac 2440041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 666538 - 666659
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| |||||||||||||||||||||  |||||| | | | ||| |||||| |||||||||| ||  ||||||||  ||||||||||||||||||||    
T  666538 ataagtgccagaaagtagtatttcaaatgattatttatgacacgtttgttacttatttcacaagttattcagggaaaagccgagagaaaagtgattattg 666637  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||||||||||    
T  666638 acctattacgctttattcatct 666659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 23542526 - 23542586
Alignment:
Q  169 ttacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattgccctattac 228  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||    
T  23542526 ttacttgtttcacaagttatctagggaaaagccgagagaaaagtgataattgccctattac 23542586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 13002807 - 13002915
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    ||||||| ||| ||||||||||| | |||  |||||| ||| | ||| |||||| |||||||||| ||||||||||||  |||||||||||||| | |||    
T  13002807 ataagtgccaggaagtagtattttagatgattatttacggcacgtttgttacttctttcacaagttatctagggaaaagccgagagaaaagtgaattttg 13002906  T
Q  220 ccctattac 228  Q
     ||||||||    
T  13002907 acctattac 13002915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 16406600 - 16406496
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||  ||||||  |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | |||||| |||||||||||    
T  16406600 ataagtgctagaaagatgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattatt 16406501  T
Q  219 gccct 223  Q
    |||||    
T  16406500 gccct 16406496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 36753704 - 36753812
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||| ||||| |  || ||||| ||||||||||  ||||| ||  |||||||| | |||||| ||||||||||||    
T  36753704 ataagtgctagaaagttgtattttaaatgaatattcatagcacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgattattg 36753803  T
Q  220 ccctattac 228  Q
    |||| ||||    
T  36753804 cccttttac 36753812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 4507686 - 4507573
Alignment:
Q  129 cagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattgccctatta 227  Q
    |||||| ||||||||||||||  |||||| ||| | ||| ||||||||||||||||| ||  |||||||| ||||||||||||||||||||| ||| |||    
T  4507686 cagaaaatagtatttcaaatgattatttacggcacgtttgttacttgtttcacaagttattcagggaaaagtcgagagaaaagtgattattgacctgtta 4507587  T
Q  228 cacgttattcatct 241  Q
      | ||||||||||    
T  4507586 tgctttattcatct 4507573  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 20649855 - 20649963
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattg 219  Q
    |||||||  ||||||||||| ||||| || ||||| ||||| ||||| |||||||||| |||||| ||  |||||||| | |||||| ||||||||||||    
T  20649855 ataagtgctagaaagtagtaattcaagtgaatattcaaggcacttttgttacttgttttacaagttattgagggaaaagctgagagataagtgattattg 20649954  T
Q  220 ccctattac 228  Q
    |||| ||||    
T  20649955 cccttttac 20649963  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 4592071 - 4591994
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa 198  Q
    ||||||||| | ||||||| ||| ||| || |||||| ||| | ||| |||||||||| |||||| ||||||||||||    
T  4592071 ataagtgtcgggaagtagtgttttaaaggtttatttacggcacgtttgttacttgttttacaagttatctagggaaaa 4591994  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 10940134 - 10940226
Alignment:
Q  130 agaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgcc 221  Q
    ||||||| |||||| ||||| ||||| ||  | ||||| ||||||||||  ||||| ||  |||||||| | |||||||||||||||||||||    
T  10940134 agaaagttgtattttaaatgaatattcaaaacacttttgttacttgttttgcaagttattgagggaaaagccgagagaaaagtgattattgcc 10940226  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 2267354 - 2267475
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattg 219  Q
    |||||||  ||||||||||||||||||||  |||||| | | | ||| |||||| |||||||||| ||  ||| |||| | |||||||||||||||||||    
T  2267354 ataagtgctagaaagtagtatttcaaatgattatttacgacacgtttgttacttatttcacaagttattcaggaaaaagccgagagaaaagtgattattg 2267453  T
Q  220 ccctattacacgttattcatct 241  Q
     |||||||| | ||||||||||    
T  2267454 acctattacgctttattcatct 2267475  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 38658425 - 38658305
Alignment:
Q  122 taagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatcga-gagaaaagtgattattgc 220  Q
    |||||| |||||| || |||||||||||  |||||| ||| | ||| ||||| ||||||||| | ||  |||||||| | | |||||||||||||||||     
T  38658425 taagtgccagaaattactatttcaaatgattatttacggcacgtttgttactagtttcacaaattattcagggaaaagccaagagaaaagtgattattga 38658326  T
Q  221 cctattacacgttattcatct 241  Q
    |||||||| | ||||||||||    
T  38658325 cctattacgctttattcatct 38658305  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 5063028 - 5063101
Alignment:
Q  169 ttacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgccctattacacgttattcatct 241  Q
    ||||||||||||||||| ||  |||||||| | | ||||||||||||||||| |||||||| | ||||||||||    
T  5063028 ttacttgtttcacaagttattcagggaaaagccgggagaaaagtgattattgacctattacgctttattcatct 5063101  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 45067398 - 45067519
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||| ||||| || || ||||||||||||||||  ||||| ||  ||||||||  ||||||| |||||||||||     
T  45067398 ataagtgctagaaagttgtattttaaatgaatattcaaagcacttttattacttgttttgcaagttattgagggaaaagccgagagataagtgattatta 45067497  T
Q  220 ccctattacacgttattcatct 241  Q
    |||| |||| | ||||| ||||    
T  45067498 cccttttacgctttatttatct 45067519  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 15013756 - 15013648
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatgtatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattg 219  Q
    |||||||  ||||||| |||||| ||||| ||||| || || ||||| ||||||||||  ||||| ||  |||||||| | |||||| ||||||||||||    
T  15013756 ataagtgctagaaagttgtattttaaatgaatattcaaagcacttttgttacttgttttgcaagttattgagggaaaaaccgagagataagtgattattg 15013657  T
Q  220 ccctattac 228  Q
    |||| ||||    
T  15013656 cccttttac 15013648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 4973134 - 4973086
Alignment:
Q  150 tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa 198  Q
    ||||||| |||| ||||| |||||||||| |||||| ||||||||||||    
T  4973134 tatattttaggcacttttgttacttgttttacaagttatctagggaaaa 4973086  T

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Target: scaffold0265 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 14114 - 14174
Alignment:
Q  169 ttacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattattgccctattac 228  Q
    ||||||||||||||||| || ||||||||| | |||||||||||||| |||||||||||||    
T  14114 ttacttgtttcacaagttatttagggaaaagccgagagaaaagtgataattgccctattac 14174  T

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Target: scaffold0536 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 11303 - 11412
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaa-tcgagagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| || || ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| |||||| | |||||||||||    
T  11303 ataagtgctagaaagttgtattttaagtgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagtcgagaaataagtgattatt 11402  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  11403 gcccttttac 11412  T

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Target: scaffold0510 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 2297 - 2188
Alignment:
Q  121 ataagtgtcagaaagtagtatttcaaatg-tatatttaaggcgcttttattacttgtttcacaagtaatctagggaaaatc-gagagaaaagtgattatt 218  Q
    |||||||  ||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||  ||||| ||  |||||||| | |||| | |||||||||||    
T  2297 ataagtgctagaaagttgtattttaaatgatatattttaggcacttttgttacttgttttgcaagttattgagggaaaagctgagaaataagtgattatt 2198  T
Q  219 gccctattac 228  Q
    ||||| ||||    
T  2197 gcccttttac 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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