View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7944_low_9 (Length: 226)
Name: NF7944_low_9
Description: NF7944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7944_low_9 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 11908471 - 11908681
Alignment:
| Q |
14 |
catattcttggtgacttcnnnnnnngacagacttagtgactcatattcggtgtatattgcgtaagaaaaatactatatacnnnnnnnnnnngaacaaggc |
113 |
Q |
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| T |
11908471 |
catattcttggtgacttctttttttgacagacttagtgattgatatccggtgtatattgcgtaagaaaaatactatata--ttttttttttgaacaagcc |
11908568 |
T |
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| Q |
114 |
aaaatgaaatatgtattagaaaccacacaagtgtttcatcctgcacaagatgtgcaaaagaaaaacattcgacattattacaaagtcaagtcaattgtgc |
213 |
Q |
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| T |
11908569 |
aaaataaaatctgtattagaaaccacacaagtgcttcatcccgcacaagatgttcaaaagaaaaacactcgacattattacaaagtcaagtcaattgtgc |
11908668 |
T |
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| Q |
214 |
ttcaaaggagcgc |
226 |
Q |
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| T |
11908669 |
tttaaaggagcgc |
11908681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 7156558 - 7156671
Alignment:
| Q |
113 |
caaaatgaaatatgtattagaaaccacacaagtgtttcatcctgcacaagatgtgcaaaagaaaaacattcgacattattacaaagtcaagtcaattgtg |
212 |
Q |
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| T |
7156558 |
caaaatggaatatatattagaaaccacatgagtgcttcatctcgtacaagatgtgaaaaagagaaatagtcaacattattacagagtcaagtcatttgtg |
7156657 |
T |
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| Q |
213 |
cttcaaaggagcgc |
226 |
Q |
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| T |
7156658 |
cctcaaaggagcgc |
7156671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 41530776 - 41530707
Alignment:
| Q |
113 |
caaaatgaaatatgtattagaaaccacacaagtgtttcatcctgcacaagatgtgcaaaagaaaaacatt |
182 |
Q |
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| T |
41530776 |
caaaatgaaatataaattagaaactagatgagtgtttcatctcgcacaagatgtgcaaaagagaaacatt |
41530707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 15276656 - 15276721
Alignment:
| Q |
106 |
aacaaggcaaaatgaaatatgtattagaaaccacacaagtgtttcatcctgcacaagatgtgcaaa |
171 |
Q |
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| T |
15276656 |
aacaagtcaaaatggaatatatattagaaatcaaacgagtgtttcatctcgcacaaaatgtgcaaa |
15276721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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