View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7945_high_1 (Length: 867)
Name: NF7945_high_1
Description: NF7945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7945_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 281 - 861
Target Start/End: Original strand, 10074208 - 10074787
Alignment:
| Q |
281 |
tgtcaacatataggatgacgaacacttaacacttaaaaatgaaaacttgatnnnnnnnnnccacttgatacttaacagagacttcgaaacaaaaaatctt |
380 |
Q |
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| T |
10074208 |
tgtcaaaatataggatgacgaacacttaacacttaaaaatgaaaacttg-ttaaaaaaaaccacttgatacttaacagatacttcgaaacaaaaaatctt |
10074306 |
T |
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| Q |
381 |
cattgacgaccaaataaatccgcgacataatcttgatttcagtaataggagagaacaaaattcaactcaataattcacactgctgcaatattttcttatc |
480 |
Q |
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| T |
10074307 |
cattgacgaccaaataaatccgcgacataatcttgatttcagtaataggagagaacaaaattcaactcaataattcacacggctgcaatattttcttatc |
10074406 |
T |
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| Q |
481 |
tgaccctggtttccggttagagggctaagatttcccatcttaatcatcgcgttggcaaaatcgaagctgaagagtagcgggttattggcgtaagctgaaa |
580 |
Q |
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| T |
10074407 |
tgaccctggtctccagttagagggctaagatttcccatcttaatcatcgcgttagcaaagtcgatgctgaagagtaacgggttattggcgtaagctgaaa |
10074506 |
T |
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| Q |
581 |
ctttgtaatcagtggaaccaccattatagagttgttgatcagaatgcaaaagacctttcttgttcaataagtttctgtaataagcattgtcaaagaaatt |
680 |
Q |
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| T |
10074507 |
ctttgtaatcagtggaaccaccattatagagttgttgatcagaatgcaaaagacctttcttgttcaataagtttctgtaataagcattgtcaaagaaatt |
10074606 |
T |
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| Q |
681 |
tggagttgtggcgtctaaagaagctaagttgttatcaccaccactttttggacatggtaaaaacgcttgtaatgattttgcgtaattaggatctatgttg |
780 |
Q |
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| T |
10074607 |
tggagttgtggcgtctaaagaagctaagttgttatcaccaccactttttggacatggtaaaaacgcttgtaatgattttgcgtaattaggatctatgttg |
10074706 |
T |
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| Q |
781 |
ctttcgttgtaaatcctgtttcggatgaggccgcattttgattttcctattgtgtgagcacctatacaacaccaaactcga |
861 |
Q |
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| T |
10074707 |
ctttcgttgtaaatcctgtttcggatgaggccgcattttgcttttcctattgtgtgagcacctatacaacaacaaattcga |
10074787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 451 - 736
Target Start/End: Original strand, 10082882 - 10083167
Alignment:
| Q |
451 |
taattcacactgctgcaatattttcttatctgaccctggtttccggttagagggctaagatttcccatcttaatcatcgcgttggcaaaatcgaagctga |
550 |
Q |
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| T |
10082882 |
taattcactctgctgcaatattttctgatctgaccctggtttccagtaagagggctaagatttcccatcttaatcatcgccttagcgaaatcgaatctaa |
10082981 |
T |
|
| Q |
551 |
agagtagcgggttattggcgtaagctgaaactttgtaatcagtggaaccaccattatagagttgttgatcagaatgcaaaagacctttcttgttcaataa |
650 |
Q |
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| T |
10082982 |
agagatacggatttcttgcataagccaaaactttgtagtcggttgaaccgccgttatagagttcttgatcagaatgcaaaagaccccttttgaataataa |
10083081 |
T |
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| Q |
651 |
gtttctgtaataagcattgtcaaagaaatttggagttgtggcgtctaaagaagctaagttgttatcaccaccactttttggacatg |
736 |
Q |
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| T |
10083082 |
atttctgtaataagcactgtcaaagaatgctggagttgtgctgtctaaattggctaagttgttatcaccaccattccttggacatg |
10083167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 10073876 - 10074002
Alignment:
| Q |
19 |
actcttgcaaatgtggtcacgtccttaactatgtactcaaaatatcatta--------------caagcctctttctataaaa-aagataggtgataaaa |
103 |
Q |
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| T |
10073876 |
actcttgcaaatgtggtcacgtccttaactatgtactcaaaatatcattatgaatgaaccgttacaagcctctttctataaaaaaagataggtgataaaa |
10073975 |
T |
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| Q |
104 |
aacggataaattaggggaacatataat |
130 |
Q |
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| T |
10073976 |
aatggataaattaggggaacatataat |
10074002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 10074051 - 10074091
Alignment:
| Q |
125 |
tataataaactgaaagaacaaggcatatatattaccaattg |
165 |
Q |
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| T |
10074051 |
tatattaaactgaaagaacaaggcatatataataccaattg |
10074091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 589 - 674
Target Start/End: Complemental strand, 27203422 - 27203337
Alignment:
| Q |
589 |
tcagtggaaccaccattatagagttgttgatcagaatgcaaaagacctttcttgttcaataagtttc-tgtaataagcattgtcaaa |
674 |
Q |
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| T |
27203422 |
tcagtagaaccaccactgaagagttgttgatcagaatgtaaaagtccttttttgtt-aacaagattcttgaaataagcattgtcaaa |
27203337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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